Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 1-666 |
| Cow position: | chr29:8062238-8062949 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 226 |
| Conread position: | 139-671 |
| Cow position: | chr29:105060-104511 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 364 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 7 |
| Conread position: | 147-672 |
| Cow position: | chr29:16016687-16017198 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 169-672 |
| Cow position: | chr29:11856074-11855535 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 359 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 225-664 |
| Cow position: | chr29:48080-48526 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 271-609 |
| Cow position: | chr29:2841016-2841359 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-633 |
| Cow position: | chr29:410169-410544 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 96, 48 |
| Conread position: | 271-660 |
| Cow position: | chr29:38227336-38226939 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 271-662 |
| Cow position: | chr29:32540167-32539763 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr29:7430862-7431265 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr29:10647894-10648301 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-664 |
| Cow position: | chr29:16022887-16022480 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 271-664 |
| Cow position: | chr29:20251515-20251110 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 271-664 |
| Cow position: | chr29:23976197-23975790 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 89, 63 |
| Conread position: | 271-672 |
| Cow position: | chr29:2100202-2099781 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-672 |
| Cow position: | chr29:19622891-19623311 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 273 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 271-672 |
| Cow position: | chr29:39079354-39079769 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 34, 81 |
| Conread position: | 272-672 |
| Cow position: | chr29:25932187-25932608 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 297-660 |
| Cow position: | chr29:35196991-35196621 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 308-582 |
| Cow position: | chr29:11049594-11049320 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 94, 33 |
| Conread position: | 308-670 |
| Cow position: | chr29:27040456-27040825 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 151, 33 |
| Conread position: | 320-582 |
| Cow position: | chr29:15949882-15950150 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 326-563 |
| Cow position: | chr29:43365702-43365932 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 339-563 |
| Cow position: | chr29:5957891-5957664 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 350-664 |
| Cow position: | chr29:10844518-10844196 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 352-583 |
| Cow position: | chr29:669781-670016 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr29:19885346-19885110 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr29:27980643-27980877 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 352-583 |
| Cow position: | chr29:35297150-35296914 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 175 |
| Conread position: | 352-627 |
| Cow position: | chr29:610336-610626 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 356-583 |
| Cow position: | chr29:18856673-18856904 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr29:34925750-34925514 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-670 |
| Cow position: | chr29:21543098-21543426 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 184 |
| Conread position: | 359-600 |
| Cow position: | chr29:19653376-19653131 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-609 |
| Cow position: | chr29:10823701-10823961 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-664 |
| Cow position: | chr29:2690168-2689852 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 359-664 |
| Cow position: | chr29:6266233-6266543 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 43, 251 |
| Conread position: | 359-664 |
| Cow position: | chr29:26164554-26164872 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-664 |
| Cow position: | chr29:45459984-45459665 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 175 |
| Conread position: | 372-664 |
| Cow position: | chr29:43322810-43322510 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 118 |
| Conread position: | 379-582 |
| Cow position: | chr29:42802394-42802186 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 166 |
| Conread position: | 380-639 |
| Cow position: | chr29:14013711-14013445 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 137 |
| Conread position: | 380-639 |
| Cow position: | chr29:14072700-14072966 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 137 |
| Conread position: | 384-551 |
| Cow position: | chr29:10847849-10848020 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 426-582 |
| Cow position: | chr29:17663104-17662945 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.