Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 1-662 |
| Cow position: | chr4:1496404-1497085 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 50 |
| Conread position: | 1-672 |
| Cow position: | chr4:968655-969379 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 114 |
| Conread position: | 80-316 |
| Cow position: | chr4:32622257-32622005 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 93 |
| Conread position: | 103-664 |
| Cow position: | chr4:22472416-22471847 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 139-672 |
| Cow position: | chr4:495750-496288 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 139-672 |
| Cow position: | chr4:40824034-40824586 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 158-670 |
| Cow position: | chr4:4176610-4176098 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 172-667 |
| Cow position: | chr4:17530254-17530756 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 241-657 |
| Cow position: | chr4:6214447-6214877 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 252-551 |
| Cow position: | chr4:17382324-17382635 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 16, 179 |
| Conread position: | 270-672 |
| Cow position: | chr4:355989-355569 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 271-626 |
| Cow position: | chr4:16359961-16359593 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr4:36896447-36896047 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr4:43881188-43880782 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 271-664 |
| Cow position: | chr4:44725163-44724756 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr4:48026476-48026070 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 273-664 |
| Cow position: | chr4:12241140-12241546 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 290-670 |
| Cow position: | chr4:21337939-21338331 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 318 |
| Conread position: | 297-582 |
| Cow position: | chr4:11618900-11618617 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 162, 47 |
| Conread position: | 297-664 |
| Cow position: | chr4:12587347-12586971 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 298-657 |
| Cow position: | chr4:54158048-54157693 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 307-582 |
| Cow position: | chr4:1463887-1464161 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 320-580 |
| Cow position: | chr4:11384989-11384725 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 48, 138 |
| Conread position: | 320-582 |
| Cow position: | chr4:28831056-28830792 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 320-657 |
| Cow position: | chr4:8598126-8598473 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 347-667 |
| Cow position: | chr4:62565991-62565651 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 21, 134 |
| Conread position: | 352-583 |
| Cow position: | chr4:100934-101170 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr4:158514-158278 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr4:6268633-6268865 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 18 |
| Conread position: | 352-583 |
| Cow position: | chr4:27333434-27333207 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 5, 165 |
| Conread position: | 352-583 |
| Cow position: | chr4:32212166-32211930 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr4:47764172-47764407 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 131 |
| Conread position: | 352-626 |
| Cow position: | chr4:18424526-18424810 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 249 |
| Conread position: | 352-639 |
| Cow position: | chr4:1930625-1930926 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-664 |
| Cow position: | chr4:5880164-5879843 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 5, 202 |
| Conread position: | 352-672 |
| Cow position: | chr4:30307460-30307793 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 5, 291 |
| Conread position: | 353-582 |
| Cow position: | chr4:66178991-66179224 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 353-582 |
| Cow position: | chr4:66925994-66925763 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 356-583 |
| Cow position: | chr4:602987-602756 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-583 |
| Cow position: | chr4:9587257-9587026 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr4:13548023-13547792 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr4:16056595-16056365 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 112 |
| Conread position: | 356-583 |
| Cow position: | chr4:65223540-65223771 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-645 |
| Cow position: | chr4:9354777-9355080 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 359-609 |
| Cow position: | chr4:6490374-6490631 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 228 |
| Conread position: | 359-639 |
| Cow position: | chr4:13492566-13492277 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 128 |
| Conread position: | 359-647 |
| Cow position: | chr4:33073119-33073421 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 138 |
| Conread position: | 359-664 |
| Cow position: | chr4:17926264-17926582 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-664 |
| Cow position: | chr4:57979618-57979304 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 359-672 |
| Cow position: | chr4:41331429-41331100 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 284 |
| Conread position: | 369-649 |
| Cow position: | chr4:60264587-60264881 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 372-626 |
| Cow position: | chr4:24445229-24445491 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 60 |
| Conread position: | 372-664 |
| Cow position: | chr4:3961569-3961265 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 30, 269 |
| Conread position: | 372-664 |
| Cow position: | chr4:18516874-18516569 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 38, 128 |
| Conread position: | 372-664 |
| Cow position: | chr4:25599641-25599946 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 30, 270 |
| Conread position: | 372-664 |
| Cow position: | chr4:41119991-41119686 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 220 |
| Conread position: | 376-672 |
| Cow position: | chr4:38904170-38903864 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 33 |
| Conread position: | 401-672 |
| Cow position: | chr4:3830423-3830138 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 57, 115 |
| Conread position: | 401-672 |
| Cow position: | chr4:39271989-39272281 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 411-672 |
| Cow position: | chr4:4906084-4905813 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 233 |
| Conread position: | 460-667 |
| Cow position: | chr4:24198328-24198531 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 122, 150 |
Show alignments to all cow chromosomes.