Cow genome map

Conread name: Lym2-sn01_E07.f

Conread position: 1-300
Cow position: chr5:28023581-28023264 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 230
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 47, 179

Conread position: 1-349
Cow position: chr5:18401910-18402287 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 234
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 71

Conread position: 1-352
Cow position: chr5:41358005-41358390 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 216

Conread position: 1-393
Cow position: chr5:58055004-58055422 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 286
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 120

Conread position: 1-666
Cow position: chr5:24108120-24108825 (view UCSC Genome Browser custom track)
Alignm length: 716
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 49

Conread position: 104-474
Cow position: chr5:28570952-28570566 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 280
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 38, 18

Conread position: 141-662
Cow position: chr5:25000317-25000875 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 373
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 31, 23

Conread position: 146-672
Cow position: chr5:39872682-39872170 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 13

Conread position: 231-582
Cow position: chr5:27651777-27652125 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 28

Conread position: 265-663
Cow position: chr5:58334401-58334821 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 140

Conread position: 271-589
Cow position: chr5:73489387-73489710 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 214
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 34, 83

Conread position: 271-609
Cow position: chr5:49119106-49119456 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 233
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 62

Conread position: 271-663
Cow position: chr5:57482372-57482778 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 260
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 34, 49

Conread position: 271-672
Cow position: chr5:2914622-2914204 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 270
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 49

Conread position: 271-672
Cow position: chr5:37732520-37732099 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 280
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 42, 84

Conread position: 271-672
Cow position: chr5:45700441-45700037 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 265
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 89

Conread position: 272-672
Cow position: chr5:415549-415969 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 276
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 82, 28

Conread position: 288-660
Cow position: chr5:10918954-10918572 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 246
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 39

Conread position: 289-582
Cow position: chr5:46644840-46644545 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 68, 25

Conread position: 297-552
Cow position: chr5:34696744-34696490 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 105, 18

Conread position: 297-660
Cow position: chr5:39164656-39165032 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 247
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 105, 44

Conread position: 297-664
Cow position: chr5:46738436-46738817 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 255
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 52

Conread position: 301-553
Cow position: chr5:27570251-27570000 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 170
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 100, 40

Conread position: 307-563
Cow position: chr5:41529449-41529714 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 42, 215

Conread position: 307-660
Cow position: chr5:29009486-29009125 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 244
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 95, 21

Conread position: 308-672
Cow position: chr5:32733119-32733499 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 94, 20

Conread position: 310-670
Cow position: chr5:26769941-26769566 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 249
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 36, 153

Conread position: 314-582
Cow position: chr5:31706705-31706434 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 181
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 12

Conread position: 314-597
Cow position: chr5:46776210-46775915 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 194
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 12

Conread position: 318-583
Cow position: chr5:49593324-49593598 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 186
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 43

Conread position: 318-671
Cow position: chr5:53626637-53627005 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 265
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 15, 42

Conread position: 320-609
Cow position: chr5:27489374-27489073 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 200
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 320-671
Cow position: chr5:49129345-49128985 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 250
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 13

Conread position: 320-672
Cow position: chr5:28031603-28031236 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 244
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 11

Conread position: 320-672
Cow position: chr5:51163028-51162668 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 6, 202

Conread position: 320-672
Cow position: chr5:52434093-52433728 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 258
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 29, 40

Conread position: 321-672
Cow position: chr5:41962111-41962485 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 0

Conread position: 331-664
Cow position: chr5:64781901-64782251 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 24, 315

Conread position: 331-672
Cow position: chr5:28023270-28022914 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 312

Conread position: 339-672
Cow position: chr5:34203039-34202693 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 232
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 63, 18

Conread position: 341-662
Cow position: chr5:41358639-41358970 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 29, 88

Conread position: 352-579
Cow position: chr5:2531364-2531132 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 5, 167

Conread position: 352-579
Cow position: chr5:10776171-10776403 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr5:6588927-6589164 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 163
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr5:26079126-26079361 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 51, 166

Conread position: 352-583
Cow position: chr5:27909179-27909415 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 5, 117

Conread position: 352-583
Cow position: chr5:54932125-54932361 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 117

Conread position: 352-586
Cow position: chr5:45182010-45182249 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 166
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 352-597
Cow position: chr5:46664096-46663840 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 5, 0

Conread position: 352-627
Cow position: chr5:32772575-32772285 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 5, 0

Conread position: 356-583
Cow position: chr5:44459571-44459340 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 162

Conread position: 356-583
Cow position: chr5:59482341-59482111 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 161

Conread position: 356-626
Cow position: chr5:48468191-48468472 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 191
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 162

Conread position: 356-671
Cow position: chr5:49182357-49182030 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 46, 132

Conread position: 359-576
Cow position: chr5:3785870-3785654 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 42, 83

Conread position: 359-583
Cow position: chr5:4019113-4019341 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 359-583
Cow position: chr5:58196087-58195859 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 359-626
Cow position: chr5:30579407-30579126 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 197
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 43, 0

Conread position: 359-664
Cow position: chr5:4069073-4068757 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 43, 71

Conread position: 359-664
Cow position: chr5:24098734-24098416 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 43, 233

Conread position: 359-664
Cow position: chr5:55628071-55627755 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 221
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 43, 187

Conread position: 359-672
Cow position: chr5:32673655-32673989 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 359-672
Cow position: chr5:32945959-32945628 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 43, 283

Conread position: 359-672
Cow position: chr5:49518743-49518413 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 222
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 162

Conread position: 359-672
Cow position: chr5:51319167-51319493 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 90, 31

Conread position: 365-583
Cow position: chr5:14380241-14380020 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 96, 152

Conread position: 365-583
Cow position: chr5:29042590-29042369 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 31, 150

Conread position: 370-582
Cow position: chr5:57977332-57977117 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 32, 105

Conread position: 372-664
Cow position: chr5:48808643-48808948 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 30, 270

Conread position: 372-672
Cow position: chr5:2430060-2430379 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 30, 220

Conread position: 379-582
Cow position: chr5:24330339-24330132 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 23, 0

Conread position: 385-582
Cow position: chr5:61019790-61019986 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 116

Conread position: 387-507
Cow position: chr5:31916026-31915904 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 77

Conread position: 388-672
Cow position: chr5:58055697-58055999 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 62, 27

Conread position: 389-647
Cow position: chr5:23755564-23755836 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 244

Conread position: 401-672
Cow position: chr5:6158156-6158441 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 196
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 168

Conread position: 409-580
Cow position: chr5:5786573-5786747 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 409-582
Cow position: chr5:17774006-17774182 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 41, 163

Conread position: 411-664
Cow position: chr5:1341766-1342026 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 34, 43

Conread position: 411-668
Cow position: chr5:3504218-3504487 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 48, 180

Conread position: 426-597
Cow position: chr5:3964481-3964307 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.