Cow genome map
Conread name: | Lym2-sn01_E07.f |
Conread position: | 1-300 |
Cow position: | chr5:28023581-28023264 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 230 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 47, 179 |
Conread position: | 1-349 |
Cow position: | chr5:18401910-18402287 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 234 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 47, 71 |
Conread position: | 1-352 |
Cow position: | chr5:41358005-41358390 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 273 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 51, 216 |
Conread position: | 1-393 |
Cow position: | chr5:58055004-58055422 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 286 |
Alignm E-value: | 3e-36 |
Alignm gaps (pig, cow): | 41, 120 |
Conread position: | 1-666 |
Cow position: | chr5:24108120-24108825 (view UCSC Genome Browser custom track) |
Alignm length: | 716 |
Alignm identity: | 500 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 49 |
Conread position: | 104-474 |
Cow position: | chr5:28570952-28570566 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 280 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 38, 18 |
Conread position: | 141-662 |
Cow position: | chr5:25000317-25000875 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 373 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 31, 23 |
Conread position: | 146-672 |
Cow position: | chr5:39872682-39872170 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 13 |
Conread position: | 231-582 |
Cow position: | chr5:27651777-27652125 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 236 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 15, 28 |
Conread position: | 265-663 |
Cow position: | chr5:58334401-58334821 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 140 |
Conread position: | 271-589 |
Cow position: | chr5:73489387-73489710 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 214 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 34, 83 |
Conread position: | 271-609 |
Cow position: | chr5:49119106-49119456 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 233 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 34, 62 |
Conread position: | 271-663 |
Cow position: | chr5:57482372-57482778 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 260 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 34, 49 |
Conread position: | 271-672 |
Cow position: | chr5:2914622-2914204 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 270 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 29, 49 |
Conread position: | 271-672 |
Cow position: | chr5:37732520-37732099 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 280 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 42, 84 |
Conread position: | 271-672 |
Cow position: | chr5:45700441-45700037 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 265 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 32, 89 |
Conread position: | 272-672 |
Cow position: | chr5:415549-415969 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 276 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 82, 28 |
Conread position: | 288-660 |
Cow position: | chr5:10918954-10918572 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 246 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 19, 39 |
Conread position: | 289-582 |
Cow position: | chr5:46644840-46644545 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 195 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 68, 25 |
Conread position: | 297-552 |
Cow position: | chr5:34696744-34696490 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 175 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 105, 18 |
Conread position: | 297-660 |
Cow position: | chr5:39164656-39165032 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 247 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 105, 44 |
Conread position: | 297-664 |
Cow position: | chr5:46738436-46738817 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 255 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 36, 52 |
Conread position: | 301-553 |
Cow position: | chr5:27570251-27570000 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 170 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 100, 40 |
Conread position: | 307-563 |
Cow position: | chr5:41529449-41529714 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 183 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 42, 215 |
Conread position: | 307-660 |
Cow position: | chr5:29009486-29009125 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 244 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 95, 21 |
Conread position: | 308-672 |
Cow position: | chr5:32733119-32733499 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 247 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 94, 20 |
Conread position: | 310-670 |
Cow position: | chr5:26769941-26769566 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 249 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 36, 153 |
Conread position: | 314-582 |
Cow position: | chr5:31706705-31706434 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 181 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 41, 12 |
Conread position: | 314-597 |
Cow position: | chr5:46776210-46775915 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 194 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 43, 12 |
Conread position: | 318-583 |
Cow position: | chr5:49593324-49593598 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 186 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 13, 43 |
Conread position: | 318-671 |
Cow position: | chr5:53626637-53627005 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 265 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 15, 42 |
Conread position: | 320-609 |
Cow position: | chr5:27489374-27489073 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 200 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 48, 0 |
Conread position: | 320-671 |
Cow position: | chr5:49129345-49128985 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 250 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 22, 13 |
Conread position: | 320-672 |
Cow position: | chr5:28031603-28031236 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 244 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 18, 11 |
Conread position: | 320-672 |
Cow position: | chr5:51163028-51162668 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 256 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 6, 202 |
Conread position: | 320-672 |
Cow position: | chr5:52434093-52433728 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 258 |
Alignm E-value: | 9e-38 |
Alignm gaps (pig, cow): | 29, 40 |
Conread position: | 321-672 |
Cow position: | chr5:41962111-41962485 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 253 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 331-664 |
Cow position: | chr5:64781901-64782251 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 239 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 24, 315 |
Conread position: | 331-672 |
Cow position: | chr5:28023270-28022914 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 312 |
Conread position: | 339-672 |
Cow position: | chr5:34203039-34202693 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 232 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 63, 18 |
Conread position: | 341-662 |
Cow position: | chr5:41358639-41358970 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 246 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 29, 88 |
Conread position: | 352-579 |
Cow position: | chr5:2531364-2531132 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 162 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 5, 167 |
Conread position: | 352-579 |
Cow position: | chr5:10776171-10776403 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 162 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 352-583 |
Cow position: | chr5:6588927-6589164 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 163 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 352-583 |
Cow position: | chr5:26079126-26079361 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 160 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 51, 166 |
Conread position: | 352-583 |
Cow position: | chr5:27909179-27909415 (view UCSC Genome Browser custom track) |
Alignm length: | 238 |
Alignm identity: | 164 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 5, 117 |
Conread position: | 352-583 |
Cow position: | chr5:54932125-54932361 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 164 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 5, 117 |
Conread position: | 352-586 |
Cow position: | chr5:45182010-45182249 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 166 |
Alignm E-value: | 4e-30 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 352-597 |
Cow position: | chr5:46664096-46663840 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 173 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 352-627 |
Cow position: | chr5:32772575-32772285 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 199 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 356-583 |
Cow position: | chr5:44459571-44459340 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 161 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 46, 162 |
Conread position: | 356-583 |
Cow position: | chr5:59482341-59482111 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 153 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 47, 161 |
Conread position: | 356-626 |
Cow position: | chr5:48468191-48468472 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 191 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 46, 162 |
Conread position: | 356-671 |
Cow position: | chr5:49182357-49182030 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 227 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 46, 132 |
Conread position: | 359-576 |
Cow position: | chr5:3785870-3785654 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 155 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 42, 83 |
Conread position: | 359-583 |
Cow position: | chr5:4019113-4019341 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 157 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 359-583 |
Cow position: | chr5:58196087-58195859 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 156 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 359-626 |
Cow position: | chr5:30579407-30579126 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 197 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 359-664 |
Cow position: | chr5:4069073-4068757 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 218 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 43, 71 |
Conread position: | 359-664 |
Cow position: | chr5:24098734-24098416 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 213 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 43, 233 |
Conread position: | 359-664 |
Cow position: | chr5:55628071-55627755 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 221 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 43, 187 |
Conread position: | 359-672 |
Cow position: | chr5:32673655-32673989 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 225 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 359-672 |
Cow position: | chr5:32945959-32945628 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 224 |
Alignm E-value: | 5e-32 |
Alignm gaps (pig, cow): | 43, 283 |
Conread position: | 359-672 |
Cow position: | chr5:49518743-49518413 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 222 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 43, 162 |
Conread position: | 359-672 |
Cow position: | chr5:51319167-51319493 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 229 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 90, 31 |
Conread position: | 365-583 |
Cow position: | chr5:14380241-14380020 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 150 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 96, 152 |
Conread position: | 365-583 |
Cow position: | chr5:29042590-29042369 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 153 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 31, 150 |
Conread position: | 370-582 |
Cow position: | chr5:57977332-57977117 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 149 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 32, 105 |
Conread position: | 372-664 |
Cow position: | chr5:48808643-48808948 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 208 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 30, 270 |
Conread position: | 372-672 |
Cow position: | chr5:2430060-2430379 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 227 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 30, 220 |
Conread position: | 379-582 |
Cow position: | chr5:24330339-24330132 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 147 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 385-582 |
Cow position: | chr5:61019790-61019986 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 143 |
Alignm E-value: | 2e-23 |
Alignm gaps (pig, cow): | 17, 116 |
Conread position: | 387-507 |
Cow position: | chr5:31916026-31915904 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 106 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 10, 77 |
Conread position: | 388-672 |
Cow position: | chr5:58055697-58055999 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 221 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 62, 27 |
Conread position: | 389-647 |
Cow position: | chr5:23755564-23755836 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 184 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 11, 244 |
Conread position: | 401-672 |
Cow position: | chr5:6158156-6158441 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 196 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 49, 168 |
Conread position: | 409-580 |
Cow position: | chr5:5786573-5786747 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 123 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 409-582 |
Cow position: | chr5:17774006-17774182 (view UCSC Genome Browser custom track) |
Alignm length: | 178 |
Alignm identity: | 132 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 41, 163 |
Conread position: | 411-664 |
Cow position: | chr5:1341766-1342026 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 184 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 34, 43 |
Conread position: | 411-668 |
Cow position: | chr5:3504218-3504487 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 188 |
Alignm E-value: | 8e-26 |
Alignm gaps (pig, cow): | 48, 180 |
Conread position: | 426-597 |
Cow position: | chr5:3964481-3964307 (view UCSC Genome Browser custom track) |
Alignm length: | 175 |
Alignm identity: | 123 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.