Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 1-295 |
| Cow position: | chr6:35434360-35434045 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 64, 181 |
| Conread position: | 1-670 |
| Cow position: | chr6:12094788-12095482 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 465 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 53-642 |
| Cow position: | chr6:32330240-32330859 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 400 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 11, 94 |
| Conread position: | 83-595 |
| Cow position: | chr6:6543465-6542946 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 197 |
| Conread position: | 85-413 |
| Cow position: | chr6:53741388-53741042 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 110 |
| Conread position: | 271-583 |
| Cow position: | chr6:331157-331469 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-589 |
| Cow position: | chr6:15140868-15141189 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 271-625 |
| Cow position: | chr6:15280240-15280605 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 271-627 |
| Cow position: | chr6:3277635-3278005 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 83, 29 |
| Conread position: | 271-664 |
| Cow position: | chr6:702266-701864 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr6:17046369-17045968 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-664 |
| Cow position: | chr6:27529692-27530094 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 271-664 |
| Cow position: | chr6:29311807-29311400 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 271-664 |
| Cow position: | chr6:35876400-35876809 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 271-664 |
| Cow position: | chr6:55544010-55544417 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 271-664 |
| Cow position: | chr6:65841903-65841504 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 329 |
| Conread position: | 272-672 |
| Cow position: | chr6:8760990-8761405 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 273-664 |
| Cow position: | chr6:34892692-34893100 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 283-626 |
| Cow position: | chr6:65928243-65927883 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 239 |
| Conread position: | 289-563 |
| Cow position: | chr6:41553313-41553036 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 177 |
| Conread position: | 292-667 |
| Cow position: | chr6:10630745-10630366 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 297-576 |
| Cow position: | chr6:10558374-10558654 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 297-663 |
| Cow position: | chr6:36526333-36525953 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 55 |
| Conread position: | 308-626 |
| Cow position: | chr6:47042925-47043258 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 94, 18 |
| Conread position: | 312-522 |
| Cow position: | chr6:31637584-31637801 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 318-672 |
| Cow position: | chr6:37116408-37116034 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 321-670 |
| Cow position: | chr6:35433795-35433441 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 135 |
| Conread position: | 331-626 |
| Cow position: | chr6:20560853-20561163 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 265 |
| Conread position: | 352-579 |
| Cow position: | chr6:58408677-58408909 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr6:1405003-1405239 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr6:1411705-1411941 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr6:3149239-3149003 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr6:13104293-13104057 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr6:13847267-13847034 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 5, 114 |
| Conread position: | 352-583 |
| Cow position: | chr6:17598044-17598280 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr6:27169816-27169576 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 5, 171 |
| Conread position: | 352-583 |
| Cow position: | chr6:28491279-28491514 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 216 |
| Conread position: | 352-583 |
| Cow position: | chr6:34127588-34127352 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr6:39908762-39908528 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 5, 208 |
| Conread position: | 352-583 |
| Cow position: | chr6:40251898-40251662 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr6:43617950-43617715 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 155 |
| Conread position: | 352-583 |
| Cow position: | chr6:68027027-68026791 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 5, 162 |
| Conread position: | 352-626 |
| Cow position: | chr6:44029274-44028994 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 45 |
| Conread position: | 352-664 |
| Cow position: | chr6:65821891-65822217 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-672 |
| Cow position: | chr6:2374935-2374599 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-672 |
| Cow position: | chr6:2554941-2554603 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 353-664 |
| Cow position: | chr6:27469482-27469161 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 353-669 |
| Cow position: | chr6:64715462-64715129 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 172 |
| Conread position: | 355-670 |
| Cow position: | chr6:15476519-15476180 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 356-583 |
| Cow position: | chr6:7866521-7866752 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr6:13944139-13943907 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-583 |
| Cow position: | chr6:16052110-16051879 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-639 |
| Cow position: | chr6:28063566-28063271 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 40, 158 |
| Conread position: | 356-642 |
| Cow position: | chr6:33460093-33459795 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 285 |
| Conread position: | 359-583 |
| Cow position: | chr6:44150329-44150557 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-615 |
| Cow position: | chr6:3889251-3889518 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 359-663 |
| Cow position: | chr6:3488172-3488490 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 43, 278 |
| Conread position: | 359-664 |
| Cow position: | chr6:65881094-65880776 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-672 |
| Cow position: | chr6:30274952-30275283 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 86, 95 |
| Conread position: | 361-672 |
| Cow position: | chr6:24239290-24238960 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 231 |
| Conread position: | 369-665 |
| Cow position: | chr6:526451-526146 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 34, 9 |
| Conread position: | 372-672 |
| Cow position: | chr6:6566819-6566508 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 30, 270 |
| Conread position: | 377-628 |
| Cow position: | chr6:34025013-34024755 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 25, 133 |
| Conread position: | 379-664 |
| Cow position: | chr6:25214465-25214168 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 23, 213 |
| Conread position: | 379-671 |
| Cow position: | chr6:59740851-59741153 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 123 |
| Conread position: | 381-660 |
| Cow position: | chr6:13277005-13276710 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 401-647 |
| Cow position: | chr6:31568621-31568872 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 36 |
| Conread position: | 402-672 |
| Cow position: | chr6:28474885-28474597 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 411-563 |
| Cow position: | chr6:21971860-21971705 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 411-598 |
| Cow position: | chr6:913816-913619 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 444-662 |
| Cow position: | chr6:63197937-63198169 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 12, 153 |
| Conread position: | 445-672 |
| Cow position: | chr6:39162323-39162094 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 11, 56 |
Show alignments to all cow chromosomes.