Cow genome map

Conread name: Lym2-sn01_E07.f

Conread position: 1-295
Cow position: chr6:35434360-35434045 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 64, 181

Conread position: 1-670
Cow position: chr6:12094788-12095482 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 465
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 46, 125

Conread position: 53-642
Cow position: chr6:32330240-32330859 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 400
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 11, 94

Conread position: 83-595
Cow position: chr6:6543465-6542946 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 197

Conread position: 85-413
Cow position: chr6:53741388-53741042 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 241
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 31, 110

Conread position: 271-583
Cow position: chr6:331157-331469 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 208
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 34, 49

Conread position: 271-589
Cow position: chr6:15140868-15141189 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 70

Conread position: 271-625
Cow position: chr6:15280240-15280605 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 244
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 34, 70

Conread position: 271-627
Cow position: chr6:3277635-3278005 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 248
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 29

Conread position: 271-664
Cow position: chr6:702266-701864 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 263
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 34, 49

Conread position: 271-664
Cow position: chr6:17046369-17045968 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 267
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 49

Conread position: 271-664
Cow position: chr6:27529692-27530094 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 266
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 79

Conread position: 271-664
Cow position: chr6:29311807-29311400 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 266
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 49

Conread position: 271-664
Cow position: chr6:35876400-35876809 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 269
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 40

Conread position: 271-664
Cow position: chr6:55544010-55544417 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 267
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 79

Conread position: 271-664
Cow position: chr6:65841903-65841504 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 256
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 329

Conread position: 272-672
Cow position: chr6:8760990-8761405 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 271
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 33, 57

Conread position: 273-664
Cow position: chr6:34892692-34893100 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 267
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 47

Conread position: 283-626
Cow position: chr6:65928243-65927883 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 237
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 63, 239

Conread position: 289-563
Cow position: chr6:41553313-41553036 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 183
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 177

Conread position: 292-667
Cow position: chr6:10630745-10630366 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 37

Conread position: 297-576
Cow position: chr6:10558374-10558654 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 185
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 110, 44

Conread position: 297-663
Cow position: chr6:36526333-36525953 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 55

Conread position: 308-626
Cow position: chr6:47042925-47043258 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 94, 18

Conread position: 312-522
Cow position: chr6:31637584-31637801 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 12

Conread position: 318-672
Cow position: chr6:37116408-37116034 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 247
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 13, 42

Conread position: 321-670
Cow position: chr6:35433795-35433441 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 135

Conread position: 331-626
Cow position: chr6:20560853-20561163 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 26, 265

Conread position: 352-579
Cow position: chr6:58408677-58408909 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 164
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr6:1405003-1405239 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr6:1411705-1411941 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr6:3149239-3149003 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr6:13104293-13104057 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr6:13847267-13847034 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 5, 114

Conread position: 352-583
Cow position: chr6:17598044-17598280 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 352-583
Cow position: chr6:27169816-27169576 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 5, 171

Conread position: 352-583
Cow position: chr6:28491279-28491514 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 216

Conread position: 352-583
Cow position: chr6:34127588-34127352 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr6:39908762-39908528 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 164
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 5, 208

Conread position: 352-583
Cow position: chr6:40251898-40251662 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 167

Conread position: 352-583
Cow position: chr6:43617950-43617715 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 155

Conread position: 352-583
Cow position: chr6:68027027-68026791 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 5, 162

Conread position: 352-626
Cow position: chr6:44029274-44028994 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 45

Conread position: 352-664
Cow position: chr6:65821891-65822217 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 5, 167

Conread position: 352-672
Cow position: chr6:2374935-2374599 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 224
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 5, 167

Conread position: 352-672
Cow position: chr6:2554941-2554603 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 223
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 5, 167

Conread position: 353-664
Cow position: chr6:27469482-27469161 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 222
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 34

Conread position: 353-669
Cow position: chr6:64715462-64715129 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 225
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 172

Conread position: 355-670
Cow position: chr6:15476519-15476180 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 240
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 69

Conread position: 356-583
Cow position: chr6:7866521-7866752 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 46, 162

Conread position: 356-583
Cow position: chr6:13944139-13943907 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 356-583
Cow position: chr6:16052110-16051879 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 356-639
Cow position: chr6:28063566-28063271 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 195
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 158

Conread position: 356-642
Cow position: chr6:33460093-33459795 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 197
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 285

Conread position: 359-583
Cow position: chr6:44150329-44150557 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 152
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 359-615
Cow position: chr6:3889251-3889518 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 181
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 359-663
Cow position: chr6:3488172-3488490 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 43, 278

Conread position: 359-664
Cow position: chr6:65881094-65880776 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 283

Conread position: 359-672
Cow position: chr6:30274952-30275283 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 86, 95

Conread position: 361-672
Cow position: chr6:24239290-24238960 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 41, 231

Conread position: 369-665
Cow position: chr6:526451-526146 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 34, 9

Conread position: 372-672
Cow position: chr6:6566819-6566508 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 205
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 270

Conread position: 377-628
Cow position: chr6:34025013-34024755 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 25, 133

Conread position: 379-664
Cow position: chr6:25214465-25214168 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 23, 213

Conread position: 379-671
Cow position: chr6:59740851-59741153 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 22, 123

Conread position: 381-660
Cow position: chr6:13277005-13276710 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 194
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 401-647
Cow position: chr6:31568621-31568872 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 36

Conread position: 402-672
Cow position: chr6:28474885-28474597 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 58, 0

Conread position: 411-563
Cow position: chr6:21971860-21971705 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 411-598
Cow position: chr6:913816-913619 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 444-662
Cow position: chr6:63197937-63198169 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 12, 153

Conread position: 445-672
Cow position: chr6:39162323-39162094 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 11, 56

Show alignments to all cow chromosomes.