Cow genome map
| Conread name: | Lym2-sn01_E07.f |
| Conread position: | 1-662 |
| Cow position: | chr9:64159677-64158956 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 224 |
| Conread position: | 3-628 |
| Cow position: | chr9:3393467-3394111 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 217 |
| Conread position: | 3-658 |
| Cow position: | chr9:7012861-7012174 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 197 |
| Conread position: | 3-671 |
| Cow position: | chr9:29328802-29328136 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 3-672 |
| Cow position: | chr9:3937278-3937966 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 474 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 80-672 |
| Cow position: | chr9:3726733-3726104 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 139-582 |
| Cow position: | chr9:37095593-37095124 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 240-598 |
| Cow position: | chr9:34992670-34992300 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 270-672 |
| Cow position: | chr9:4532736-4532319 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 271-626 |
| Cow position: | chr9:7061850-7062217 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 271-647 |
| Cow position: | chr9:1980229-1979833 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 271-648 |
| Cow position: | chr9:2171302-2170912 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 53, 35 |
| Conread position: | 271-664 |
| Cow position: | chr9:59173915-59174318 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 50 |
| Conread position: | 271-670 |
| Cow position: | chr9:9013343-9012931 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-672 |
| Cow position: | chr9:5004236-5003826 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 271-672 |
| Cow position: | chr9:10315609-10315193 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 282-664 |
| Cow position: | chr9:37970977-37971368 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 290-660 |
| Cow position: | chr9:10322030-10321655 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 296-672 |
| Cow position: | chr9:1995699-1996088 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 106, 32 |
| Conread position: | 297-672 |
| Cow position: | chr9:3543020-3542635 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 105, 36 |
| Conread position: | 302-583 |
| Cow position: | chr9:36724715-36724431 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 304-670 |
| Cow position: | chr9:3156232-3155859 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 98, 15 |
| Conread position: | 305-555 |
| Cow position: | chr9:2800346-2800591 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 306-672 |
| Cow position: | chr9:5423969-5424358 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 306-672 |
| Cow position: | chr9:37129340-37129712 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 306-672 |
| Cow position: | chr9:42569083-42568695 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 306-672 |
| Cow position: | chr9:59511003-59510623 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 307-538 |
| Cow position: | chr9:31021025-31020795 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 307-556 |
| Cow position: | chr9:44818072-44817814 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 308-672 |
| Cow position: | chr9:27034914-27034531 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 141 |
| Conread position: | 309-667 |
| Cow position: | chr9:35658167-35657785 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 49, 122 |
| Conread position: | 310-582 |
| Cow position: | chr9:28625837-28626111 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 312-569 |
| Cow position: | chr9:792317-792571 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 91, 39 |
| Conread position: | 318-582 |
| Cow position: | chr9:13477020-13477289 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 321-657 |
| Cow position: | chr9:6110805-6111135 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 323-611 |
| Cow position: | chr9:3025296-3025002 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 194 |
| Conread position: | 331-664 |
| Cow position: | chr9:30672554-30672207 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 36, 307 |
| Conread position: | 336-672 |
| Cow position: | chr9:35317399-35317753 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 337-664 |
| Cow position: | chr9:25023125-25023463 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 339-639 |
| Cow position: | chr9:51182018-51182332 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 303 |
| Conread position: | 346-583 |
| Cow position: | chr9:9054895-9055137 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 173 |
| Conread position: | 346-626 |
| Cow position: | chr9:3548007-3548296 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 352-582 |
| Cow position: | chr9:30826846-30826611 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr9:780640-780876 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 352-583 |
| Cow position: | chr9:25755059-25755295 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 352-583 |
| Cow position: | chr9:50789841-50789606 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 178 |
| Conread position: | 352-583 |
| Cow position: | chr9:64018296-64018531 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 352-664 |
| Cow position: | chr9:28678137-28677814 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 5, 194 |
| Conread position: | 353-582 |
| Cow position: | chr9:54361594-54361365 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 355-672 |
| Cow position: | chr9:3006085-3006421 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 41, 164 |
| Conread position: | 356-553 |
| Cow position: | chr9:49177668-49177869 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr9:163344-163575 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr9:16268531-16268300 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr9:25484032-25483802 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 356-583 |
| Cow position: | chr9:31194007-31194238 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr9:34242438-34242667 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 356-583 |
| Cow position: | chr9:40191517-40191748 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 162 |
| Conread position: | 356-583 |
| Cow position: | chr9:45873508-45873277 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 356-672 |
| Cow position: | chr9:37063644-37063970 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 46, 104 |
| Conread position: | 359-583 |
| Cow position: | chr9:3586524-3586299 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 359-662 |
| Cow position: | chr9:32969123-32968811 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 359-664 |
| Cow position: | chr9:29628591-29628908 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 359-664 |
| Cow position: | chr9:31807689-31807372 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 359-664 |
| Cow position: | chr9:59482516-59482834 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 283 |
| Conread position: | 359-672 |
| Cow position: | chr9:6050892-6051225 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 284 |
| Conread position: | 359-672 |
| Cow position: | chr9:60277866-60278197 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 366-582 |
| Cow position: | chr9:59443999-59443779 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 369-667 |
| Cow position: | chr9:12845405-12845706 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 34, 170 |
| Conread position: | 373-664 |
| Cow position: | chr9:42309825-42309521 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 29, 269 |
| Conread position: | 401-671 |
| Cow position: | chr9:4280569-4280282 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 409-583 |
| Cow position: | chr9:18067114-18067291 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 409-672 |
| Cow position: | chr9:4984872-4984593 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 107 |
| Conread position: | 513-670 |
| Cow position: | chr9:23410203-23410041 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 120 |
Show alignments to all cow chromosomes.