Cow genome map
| Conread name: | Lym2-sn13_F06.f |
| Conread position: | 1-187 |
| Cow position: | chrX:20958111-20957926 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 129, 43 |
| Conread position: | 1-199 |
| Cow position: | chrX:4019390-4019584 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 129, 43 |
| Conread position: | 1-238 |
| Cow position: | chrX:2147844-2147625 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-249 |
| Cow position: | chrX:37236533-37236311 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 1-305 |
| Cow position: | chrX:37137737-37138032 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 119, 35 |
| Conread position: | 1-312 |
| Cow position: | chrX:4625445-4625141 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 46 |
| Conread position: | 1-313 |
| Cow position: | chrX:11983124-11982836 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 123, 51 |
| Conread position: | 1-314 |
| Cow position: | chrX:6472241-6471940 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 124, 7 |
| Conread position: | 1-335 |
| Cow position: | chrX:20505237-20504920 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 50 |
| Conread position: | 1-335 |
| Cow position: | chrX:40353843-40353528 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 43 |
| Conread position: | 1-501 |
| Cow position: | chrX:12688541-12689009 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 484, 51 |
| Conread position: | 3-304 |
| Cow position: | chrX:2186785-2186504 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 50-501 |
| Cow position: | chrX:25453671-25453260 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 56-329 |
| Cow position: | chrX:5150217-5150480 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 57-250 |
| Cow position: | chrX:39190746-39190941 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 57-324 |
| Cow position: | chrX:25921313-25921559 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 171, 34 |
| Conread position: | 57-334 |
| Cow position: | chrX:25106712-25106434 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 58-246 |
| Cow position: | chrX:13403258-13403446 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 58-260 |
| Cow position: | chrX:4601157-4601355 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 63, 19 |
| Conread position: | 58-260 |
| Cow position: | chrX:4630890-4631088 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 58-308 |
| Cow position: | chrX:4590433-4590192 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 188, 40 |
| Conread position: | 58-329 |
| Cow position: | chrX:24201665-24201398 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 6, 168 |
| Conread position: | 58-334 |
| Cow position: | chrX:956974-956697 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 198 |
| Conread position: | 58-334 |
| Cow position: | chrX:11675559-11675289 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 58-334 |
| Cow position: | chrX:24951884-24952150 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 58-334 |
| Cow position: | chrX:43647268-43647542 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 66, 94 |
| Conread position: | 58-482 |
| Cow position: | chrX:4597225-4597634 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 58-501 |
| Cow position: | chrX:23253729-23254128 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 209, 18 |
| Conread position: | 59-209 |
| Cow position: | chrX:1330314-1330460 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 59-249 |
| Cow position: | chrX:4440338-4440154 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 139 |
| Conread position: | 60-334 |
| Cow position: | chrX:19127152-19127418 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 60-501 |
| Cow position: | chrX:19017753-19018182 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 258 |
| Conread position: | 62-246 |
| Cow position: | chrX:31817158-31816978 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 62-335 |
| Cow position: | chrX:21816751-21816482 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 70 |
| Conread position: | 63-331 |
| Cow position: | chrX:18699872-18700144 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 49, 187 |
| Conread position: | 65-320 |
| Cow position: | chrX:2700626-2700878 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 48, 24 |
| Conread position: | 66-322 |
| Cow position: | chrX:37067506-37067246 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 125 |
| Conread position: | 68-307 |
| Cow position: | chrX:18467939-18467697 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 126, 23 |
| Conread position: | 68-348 |
| Cow position: | chrX:27458250-27458524 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 70-334 |
| Cow position: | chrX:28939267-28939017 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 72-314 |
| Cow position: | chrX:24203666-24203420 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 21, 165 |
| Conread position: | 72-314 |
| Cow position: | chrX:37364894-37364651 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 72-501 |
| Cow position: | chrX:8557992-8558387 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 80-235 |
| Cow position: | chrX:263659-263815 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 84-291 |
| Cow position: | chrX:21989976-21989771 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 84-308 |
| Cow position: | chrX:18814632-18814410 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 46, 143 |
| Conread position: | 86-253 |
| Cow position: | chrX:13061003-13060836 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 86-308 |
| Cow position: | chrX:10534538-10534320 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 154, 15 |
| Conread position: | 93-314 |
| Cow position: | chrX:20715779-20715999 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 164 |
| Conread position: | 96-307 |
| Cow position: | chrX:4794045-4794251 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 32, 69 |
| Conread position: | 99-321 |
| Cow position: | chrX:4629539-4629773 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 223 |
| Conread position: | 113-263 |
| Cow position: | chrX:1427188-1427037 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 68 |
| Conread position: | 115-260 |
| Cow position: | chrX:25653544-25653399 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 143, 132 |
| Conread position: | 136-334 |
| Cow position: | chrX:18518221-18518010 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 142-333 |
| Cow position: | chrX:9051025-9051218 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 163, 114 |
| Conread position: | 153-313 |
| Cow position: | chrX:5660442-5660280 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 130, 98 |
| Conread position: | 174-330 |
| Cow position: | chrX:19216944-19217098 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 135, 73 |
| Conread position: | 297-501 |
| Cow position: | chrX:4631393-4631595 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 31 |
| Conread position: | 308-501 |
| Cow position: | chrX:956743-956558 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 312-503 |
| Cow position: | chrX:43647498-43647688 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 335-471 |
| Cow position: | chrX:31816934-31816798 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 335-500 |
| Cow position: | chrX:18814412-18814250 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 335-501 |
| Cow position: | chrX:10311978-10311824 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 87 |
| Conread position: | 335-501 |
| Cow position: | chrX:16816912-16816750 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 338-475 |
| Cow position: | chrX:2147576-2147443 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 338-501 |
| Cow position: | chrX:11675306-11675142 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 339-501 |
| Cow position: | chrX:24286200-24286034 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 50 |
Show alignments to all cow chromosomes.