Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-375 |
| Cow position: | chr10:57987059-57987445 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-421 |
| Cow position: | chr10:39849583-39850035 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-464 |
| Cow position: | chr10:33424898-33425389 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 210 |
| Conread position: | 1-465 |
| Cow position: | chr10:16797345-16796854 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 1-465 |
| Cow position: | chr10:19842311-19841846 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 29 |
| Conread position: | 1-465 |
| Cow position: | chr10:40348017-40348495 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 29 |
| Conread position: | 2-368 |
| Cow position: | chr10:20268053-20268432 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 138 |
| Conread position: | 2-368 |
| Cow position: | chr10:38723915-38723537 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 125 |
| Conread position: | 2-387 |
| Cow position: | chr10:14855255-14854872 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 96 |
| Conread position: | 2-421 |
| Cow position: | chr10:15620743-15621177 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 19 |
| Conread position: | 2-456 |
| Cow position: | chr10:44670020-44670494 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 319 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 137, 117 |
| Conread position: | 2-461 |
| Cow position: | chr10:28528759-28529225 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 170 |
| Conread position: | 2-464 |
| Cow position: | chr10:20936222-20936700 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 126, 93 |
| Conread position: | 2-464 |
| Cow position: | chr10:26292847-26293329 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 2-465 |
| Cow position: | chr10:38543280-38543750 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 2-465 |
| Cow position: | chr10:53318148-53318624 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 188 |
| Conread position: | 3-465 |
| Cow position: | chr10:22574191-22574673 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 3-465 |
| Cow position: | chr10:33221196-33221663 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 4-338 |
| Cow position: | chr10:22645673-22645355 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 78 |
| Conread position: | 4-368 |
| Cow position: | chr10:50017725-50018096 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 115 |
| Conread position: | 4-382 |
| Cow position: | chr10:22618774-22619159 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 4-383 |
| Cow position: | chr10:21516372-21516764 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 239 |
| Conread position: | 4-463 |
| Cow position: | chr10:41160054-41159581 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 102 |
| Conread position: | 4-464 |
| Cow position: | chr10:17958721-17958242 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 4-464 |
| Cow position: | chr10:25340790-25340316 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 27 |
| Conread position: | 4-465 |
| Cow position: | chr10:1380139-1379661 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:2118386-2118867 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:5867923-5868395 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:7895844-7896322 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr10:8292767-8292290 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 226 |
| Conread position: | 4-465 |
| Cow position: | chr10:13851784-13851303 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:14333204-14333682 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:14865493-14865021 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 188 |
| Conread position: | 4-465 |
| Cow position: | chr10:19141967-19142451 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 199 |
| Conread position: | 4-465 |
| Cow position: | chr10:21489583-21489109 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 188 |
| Conread position: | 4-465 |
| Cow position: | chr10:22344116-22343629 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 274 |
| Conread position: | 4-465 |
| Cow position: | chr10:25563920-25564392 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 102 |
| Conread position: | 4-465 |
| Cow position: | chr10:29629632-29630099 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 195 |
| Conread position: | 4-465 |
| Cow position: | chr10:30682851-30683323 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:30688637-30688146 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:31526357-31525888 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 187 |
| Conread position: | 4-465 |
| Cow position: | chr10:32703403-32702922 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:37127137-37127630 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 213 |
| Conread position: | 4-465 |
| Cow position: | chr10:38342724-38343211 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:39210397-39209915 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr10:39813754-39814235 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 4-465 |
| Cow position: | chr10:41569742-41569268 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-465 |
| Cow position: | chr10:51950459-51950934 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 4-465 |
| Cow position: | chr10:53172680-53173161 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 5-456 |
| Cow position: | chr10:41149104-41149553 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 8-465 |
| Cow position: | chr10:25650784-25651253 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 193 |
| Conread position: | 11-465 |
| Cow position: | chr10:10584760-10584302 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 152 |
| Conread position: | 13-351 |
| Cow position: | chr10:42115878-42115538 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 12 |
| Conread position: | 13-465 |
| Cow position: | chr10:20381336-20381795 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 92 |
| Conread position: | 14-466 |
| Cow position: | chr10:6002939-6003414 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 320 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 152 |
| Conread position: | 16-465 |
| Cow position: | chr10:57090643-57090186 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 308 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 120, 179 |
| Conread position: | 24-465 |
| Cow position: | chr10:48745195-48745651 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 198 |
| Conread position: | 26-465 |
| Cow position: | chr10:4500565-4500118 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 22 |
| Conread position: | 31-360 |
| Cow position: | chr10:31540975-31540636 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 33-465 |
| Cow position: | chr10:20368546-20368982 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 254, 51 |
| Conread position: | 41-464 |
| Cow position: | chr10:31738703-31738272 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 189, 42 |
| Conread position: | 46-465 |
| Cow position: | chr10:28948063-28947623 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 68-450 |
| Cow position: | chr10:37108965-37108570 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 296 |
| Conread position: | 70-464 |
| Cow position: | chr10:58600093-58599692 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 17 |
| Conread position: | 77-349 |
| Cow position: | chr10:53980363-53980649 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 35, 97 |
| Conread position: | 87-465 |
| Cow position: | chr10:12546541-12546144 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 133-464 |
| Cow position: | chr10:49185993-49186331 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 155, 53 |
| Conread position: | 136-465 |
| Cow position: | chr10:20373904-20374252 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 78, 139 |
| Conread position: | 144-465 |
| Cow position: | chr10:54128052-54127713 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 148, 44 |
| Conread position: | 155-465 |
| Cow position: | chr10:41654785-41654463 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 128, 31 |
| Conread position: | 161-465 |
| Cow position: | chr10:39937308-39937617 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 176-465 |
| Cow position: | chr10:36445167-36445461 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 213 |
| Conread position: | 181-465 |
| Cow position: | chr10:42633375-42633080 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 158 |
| Conread position: | 194-467 |
| Cow position: | chr10:19720660-19720946 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 213-465 |
| Cow position: | chr10:31022465-31022736 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 294-465 |
| Cow position: | chr10:58599524-58599344 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.