Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-449 |
| Cow position: | chr11:1487832-1488294 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 205 |
| Conread position: | 1-461 |
| Cow position: | chr11:9154911-9155376 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 30 |
| Conread position: | 1-464 |
| Cow position: | chr11:17105403-17105882 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 206 |
| Conread position: | 1-465 |
| Cow position: | chr11:19061796-19062272 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 248 |
| Conread position: | 1-465 |
| Cow position: | chr11:71331781-71331300 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 206 |
| Conread position: | 2-368 |
| Cow position: | chr11:12504576-12504946 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 17 |
| Conread position: | 2-463 |
| Cow position: | chr11:45107129-45106649 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 2-464 |
| Cow position: | chr11:26785532-26785058 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 208 |
| Conread position: | 2-464 |
| Cow position: | chr11:67863997-67864475 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 2-465 |
| Cow position: | chr11:10884575-10884090 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 145 |
| Conread position: | 2-465 |
| Cow position: | chr11:28393171-28392686 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 2-465 |
| Cow position: | chr11:39805993-39805527 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 2-465 |
| Cow position: | chr11:73467138-73467631 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 2-465 |
| Cow position: | chr11:85731738-85732233 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 251 |
| Conread position: | 2-467 |
| Cow position: | chr11:42364975-42364502 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 125 |
| Conread position: | 3-465 |
| Cow position: | chr11:9761502-9761977 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 240, 88 |
| Conread position: | 4-349 |
| Cow position: | chr11:37280406-37280761 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 267 |
| Conread position: | 4-357 |
| Cow position: | chr11:67296733-67297097 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 4-456 |
| Cow position: | chr11:78791789-78792261 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-463 |
| Cow position: | chr11:56917728-56918189 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 4-464 |
| Cow position: | chr11:44254352-44253874 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 159 |
| Conread position: | 4-465 |
| Cow position: | chr11:418446-418926 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 84 |
| Conread position: | 4-465 |
| Cow position: | chr11:2834555-2834077 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 4-465 |
| Cow position: | chr11:3495254-3494779 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 4-465 |
| Cow position: | chr11:4033123-4033598 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 4-465 |
| Cow position: | chr11:8265804-8265317 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 197 |
| Conread position: | 4-465 |
| Cow position: | chr11:9732399-9732877 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr11:11591245-11590763 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr11:17548435-17547973 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 125 |
| Conread position: | 4-465 |
| Cow position: | chr11:20731947-20732428 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr11:28227504-28227975 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 26 |
| Conread position: | 4-465 |
| Cow position: | chr11:30201414-30201890 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 203 |
| Conread position: | 4-465 |
| Cow position: | chr11:30254503-30254029 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 4-465 |
| Cow position: | chr11:32454337-32453856 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr11:41168419-41168900 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr11:47737270-47737743 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 26 |
| Conread position: | 4-465 |
| Cow position: | chr11:53429746-53430227 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr11:63391200-63391681 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr11:73135578-73135101 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 26 |
| Conread position: | 4-465 |
| Cow position: | chr11:75392528-75392047 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 4-465 |
| Cow position: | chr11:76371784-76372255 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 4-465 |
| Cow position: | chr11:84966389-84965912 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr11:85391548-85392029 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-470 |
| Cow position: | chr11:67445966-67446451 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 5-358 |
| Cow position: | chr11:21471069-21470719 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 43 |
| Conread position: | 5-465 |
| Cow position: | chr11:66731431-66730956 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 230 |
| Conread position: | 6-464 |
| Cow position: | chr11:49237684-49238159 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 24 |
| Conread position: | 7-465 |
| Cow position: | chr11:42310175-42310636 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 17-465 |
| Cow position: | chr11:24395577-24395116 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 189 |
| Conread position: | 18-464 |
| Cow position: | chr11:261446-261884 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 98 |
| Conread position: | 24-499 |
| Cow position: | chr11:7720132-7720623 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 55 |
| Conread position: | 41-363 |
| Cow position: | chr11:40004045-40004365 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 192, 69 |
| Conread position: | 50-465 |
| Cow position: | chr11:29666359-29666789 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 156 |
| Conread position: | 60-461 |
| Cow position: | chr11:54482291-54482707 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 21 |
| Conread position: | 77-348 |
| Cow position: | chr11:31749438-31749712 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 211, 145 |
| Conread position: | 108-349 |
| Cow position: | chr11:67155807-67155559 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 180, 124 |
| Conread position: | 120-465 |
| Cow position: | chr11:49551979-49552342 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 165, 126 |
| Conread position: | 125-465 |
| Cow position: | chr11:1493576-1493934 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 112, 60 |
| Conread position: | 127-465 |
| Cow position: | chr11:27056407-27056759 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 131-394 |
| Cow position: | chr11:27659114-27658837 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 23, 115 |
| Conread position: | 134-465 |
| Cow position: | chr11:50948180-50948520 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 148, 37 |
| Conread position: | 138-465 |
| Cow position: | chr11:49557145-49557478 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 157, 47 |
| Conread position: | 148-465 |
| Cow position: | chr11:43512501-43512823 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 142, 93 |
| Conread position: | 167-465 |
| Cow position: | chr11:87137395-87137072 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 205-465 |
| Cow position: | chr11:58138497-58138219 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 210-466 |
| Cow position: | chr11:55484278-55484003 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 249 |
| Conread position: | 225-465 |
| Cow position: | chr11:35893846-35894110 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 63, 205 |
Show alignments to all cow chromosomes.