Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-465 |
| Cow position: | chr13:18330772-18331234 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 68 |
| Conread position: | 1-465 |
| Cow position: | chr13:20539512-20539972 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 23 |
| Conread position: | 2-336 |
| Cow position: | chr13:20377260-20376942 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 131, 77 |
| Conread position: | 2-383 |
| Cow position: | chr13:54239073-54239468 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 2-464 |
| Cow position: | chr13:44324601-44325090 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-465 |
| Cow position: | chr13:33930052-33930508 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 2-466 |
| Cow position: | chr13:36105491-36105025 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 192 |
| Conread position: | 2-466 |
| Cow position: | chr13:49194367-49194841 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 128, 32 |
| Conread position: | 2-467 |
| Cow position: | chr13:22480355-22479882 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 69 |
| Conread position: | 3-364 |
| Cow position: | chr13:15883714-15884090 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 4-342 |
| Cow position: | chr13:5230598-5230939 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-372 |
| Cow position: | chr13:26846828-26846461 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 55 |
| Conread position: | 4-383 |
| Cow position: | chr13:30652934-30653325 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 169 |
| Conread position: | 4-444 |
| Cow position: | chr13:33333997-33334439 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 4-465 |
| Cow position: | chr13:680126-679650 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 219 |
| Conread position: | 4-465 |
| Cow position: | chr13:4733884-4733405 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 210 |
| Conread position: | 4-465 |
| Cow position: | chr13:4735628-4735149 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 210 |
| Conread position: | 4-465 |
| Cow position: | chr13:4943736-4943258 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr13:6665783-6666266 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr13:11827376-11827851 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 26 |
| Conread position: | 4-465 |
| Cow position: | chr13:15922107-15922585 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr13:17310768-17310289 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 4-465 |
| Cow position: | chr13:30305543-30305068 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 4-465 |
| Cow position: | chr13:31728547-31729025 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 4-465 |
| Cow position: | chr13:32549110-32548630 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 102 |
| Conread position: | 4-465 |
| Cow position: | chr13:32734836-32735321 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 166 |
| Conread position: | 4-465 |
| Cow position: | chr13:32983047-32983526 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr13:33523605-33524086 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-465 |
| Cow position: | chr13:34870313-34869834 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 4-465 |
| Cow position: | chr13:35539517-35539034 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr13:49613189-49613663 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 26 |
| Conread position: | 4-465 |
| Cow position: | chr13:49976020-49975549 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr13:50111820-50111333 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr13:50191274-50191756 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-469 |
| Cow position: | chr13:11389558-11389074 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 5-463 |
| Cow position: | chr13:43591622-43591176 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 5-465 |
| Cow position: | chr13:3313976-3313508 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 6-363 |
| Cow position: | chr13:30240899-30240536 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 179 |
| Conread position: | 6-465 |
| Cow position: | chr13:11796357-11796839 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 23 |
| Conread position: | 7-464 |
| Cow position: | chr13:25381750-25381276 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 80 |
| Conread position: | 7-465 |
| Cow position: | chr13:15279442-15279919 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 434 |
| Conread position: | 7-465 |
| Cow position: | chr13:30470027-30470493 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 206 |
| Conread position: | 7-465 |
| Cow position: | chr13:34344261-34343781 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 14-465 |
| Cow position: | chr13:21837876-21838339 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 21 |
| Conread position: | 15-440 |
| Cow position: | chr13:47368506-47368071 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 17-465 |
| Cow position: | chr13:7049978-7049521 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 190 |
| Conread position: | 18-465 |
| Cow position: | chr13:34509473-34509937 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 189 |
| Conread position: | 27-383 |
| Cow position: | chr13:60425330-60424955 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 223 |
| Conread position: | 53-465 |
| Cow position: | chr13:47576393-47575969 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 78 |
| Conread position: | 55-368 |
| Cow position: | chr13:18976705-18977018 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 114 |
| Conread position: | 59-465 |
| Cow position: | chr13:20572801-20573219 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 126 |
| Conread position: | 69-463 |
| Cow position: | chr13:11762351-11762762 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 90 |
| Conread position: | 71-463 |
| Cow position: | chr13:34906244-34906649 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 136 |
| Conread position: | 76-461 |
| Cow position: | chr13:19044286-19044686 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 45, 41 |
| Conread position: | 81-465 |
| Cow position: | chr13:8068880-8069285 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 81-465 |
| Cow position: | chr13:21698551-21698149 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 157 |
| Conread position: | 97-459 |
| Cow position: | chr13:36868161-36867788 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 100-368 |
| Cow position: | chr13:9300136-9299861 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 188, 103 |
| Conread position: | 123-465 |
| Cow position: | chr13:31609563-31609920 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 162, 83 |
| Conread position: | 144-368 |
| Cow position: | chr13:32321366-32321601 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 153-465 |
| Cow position: | chr13:16921662-16921331 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 167-465 |
| Cow position: | chr13:10374262-10373932 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 39, 59 |
| Conread position: | 192-458 |
| Cow position: | chr13:12635075-12634797 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 106, 6 |
Show alignments to all cow chromosomes.