Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-343 |
| Cow position: | chr14:28122801-28123136 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 1-359 |
| Cow position: | chr14:5531563-5531197 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 206 |
| Conread position: | 1-465 |
| Cow position: | chr14:11475067-11475545 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 1-465 |
| Cow position: | chr14:34668561-34669046 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-465 |
| Cow position: | chr14:45236737-45236273 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 139 |
| Conread position: | 2-383 |
| Cow position: | chr14:14421182-14421587 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 2-424 |
| Cow position: | chr14:37982069-37982522 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 2-465 |
| Cow position: | chr14:34054192-34053743 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 95 |
| Conread position: | 2-465 |
| Cow position: | chr14:35363630-35364122 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 213 |
| Conread position: | 2-465 |
| Cow position: | chr14:35931590-35931120 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 2-465 |
| Cow position: | chr14:41411971-41411489 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 2-465 |
| Cow position: | chr14:45187612-45188074 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 4-349 |
| Cow position: | chr14:33679286-33678949 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 84 |
| Conread position: | 4-375 |
| Cow position: | chr14:16997814-16998196 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-463 |
| Cow position: | chr14:16917504-16917982 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 196 |
| Conread position: | 4-463 |
| Cow position: | chr14:50113590-50113114 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 146 |
| Conread position: | 4-464 |
| Cow position: | chr14:27065548-27066015 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 157 |
| Conread position: | 4-464 |
| Cow position: | chr14:44691404-44690924 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 4-465 |
| Cow position: | chr14:192276-191797 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-465 |
| Cow position: | chr14:1660676-1660206 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 229 |
| Conread position: | 4-465 |
| Cow position: | chr14:12740819-12741300 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr14:15273328-15273807 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 4-465 |
| Cow position: | chr14:19326035-19326515 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 179 |
| Conread position: | 4-465 |
| Cow position: | chr14:22029248-22029724 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 20 |
| Conread position: | 4-465 |
| Cow position: | chr14:29045453-29045932 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 147 |
| Conread position: | 4-465 |
| Cow position: | chr14:32449185-32448704 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr14:34904578-34904098 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 183 |
| Conread position: | 4-465 |
| Cow position: | chr14:37226393-37225904 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr14:41271976-41272449 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 4-465 |
| Cow position: | chr14:46222306-46221825 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 259 |
| Conread position: | 4-465 |
| Cow position: | chr14:48827501-48827019 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 5-450 |
| Cow position: | chr14:8899507-8899049 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 5-463 |
| Cow position: | chr14:44554047-44553575 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 133 |
| Conread position: | 5-465 |
| Cow position: | chr14:13463651-13463182 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 25 |
| Conread position: | 5-465 |
| Cow position: | chr14:44229514-44229037 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 89 |
| Conread position: | 7-465 |
| Cow position: | chr14:46434837-46434368 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 7-470 |
| Cow position: | chr14:13861298-13861775 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 8-465 |
| Cow position: | chr14:2288477-2288012 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 199 |
| Conread position: | 18-465 |
| Cow position: | chr14:38149340-38148856 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 349 |
| Conread position: | 21-465 |
| Cow position: | chr14:7474555-7474098 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 176 |
| Conread position: | 24-456 |
| Cow position: | chr14:9849703-9850140 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 95 |
| Conread position: | 31-465 |
| Cow position: | chr14:42121380-42121836 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 41-465 |
| Cow position: | chr14:36908018-36908461 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 48-460 |
| Cow position: | chr14:26457311-26456881 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 160 |
| Conread position: | 63-465 |
| Cow position: | chr14:43557123-43556701 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 183 |
| Conread position: | 64-465 |
| Cow position: | chr14:30581958-30582374 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 142 |
| Conread position: | 97-465 |
| Cow position: | chr14:34763023-34763410 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 102-338 |
| Cow position: | chr14:30594080-30594325 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 108-467 |
| Cow position: | chr14:17768046-17768417 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 21, 44 |
| Conread position: | 114-465 |
| Cow position: | chr14:45208672-45208308 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 123-458 |
| Cow position: | chr14:23933207-23932867 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 138, 95 |
| Conread position: | 131-465 |
| Cow position: | chr14:20784684-20784336 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 134-465 |
| Cow position: | chr14:39299716-39299370 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 154, 12 |
| Conread position: | 144-465 |
| Cow position: | chr14:48706043-48705730 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 228, 54 |
| Conread position: | 147-368 |
| Cow position: | chr14:2296567-2296333 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 153-465 |
| Cow position: | chr14:16807246-16807575 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 153-467 |
| Cow position: | chr14:33713145-33712823 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 135, 65 |
| Conread position: | 159-465 |
| Cow position: | chr14:17688918-17688594 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 159-467 |
| Cow position: | chr14:33391860-33392180 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 25 |
| Conread position: | 163-465 |
| Cow position: | chr14:41444395-41444073 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 167-465 |
| Cow position: | chr14:29582165-29581847 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 61, 275 |
| Conread position: | 195-465 |
| Cow position: | chr14:34999150-34998864 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 213-465 |
| Cow position: | chr14:46506603-46506872 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 72, 128 |
| Conread position: | 226-463 |
| Cow position: | chr14:16271323-16271576 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.