Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-363 |
| Cow position: | chr16:3348687-3348312 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 191 |
| Conread position: | 1-448 |
| Cow position: | chr16:46521170-46521637 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 1-465 |
| Cow position: | chr16:1434077-1433593 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 249 |
| Conread position: | 1-465 |
| Cow position: | chr16:5487650-5487164 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-465 |
| Cow position: | chr16:21189114-21188630 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-465 |
| Cow position: | chr16:27731502-27731975 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 206 |
| Conread position: | 1-465 |
| Cow position: | chr16:29048910-29048426 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-465 |
| Cow position: | chr16:37478981-37479452 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 1-465 |
| Cow position: | chr16:41164880-41165356 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 1-465 |
| Cow position: | chr16:47403263-47402782 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 206 |
| Conread position: | 2-349 |
| Cow position: | chr16:20408298-20408642 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 2-390 |
| Cow position: | chr16:29207333-29207742 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 2-459 |
| Cow position: | chr16:25935031-25934566 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 46 |
| Conread position: | 2-465 |
| Cow position: | chr16:41573285-41572806 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 75 |
| Conread position: | 2-467 |
| Cow position: | chr16:39615128-39614654 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 2-493 |
| Cow position: | chr16:28023145-28023647 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 109 |
| Conread position: | 3-349 |
| Cow position: | chr16:47475896-47475542 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 3-465 |
| Cow position: | chr16:28194422-28194904 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 4-352 |
| Cow position: | chr16:34505574-34505217 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 203 |
| Conread position: | 4-368 |
| Cow position: | chr16:51086659-51086285 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 4-463 |
| Cow position: | chr16:15980509-15980984 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-463 |
| Cow position: | chr16:42734751-42735215 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 18 |
| Conread position: | 4-464 |
| Cow position: | chr16:839160-838686 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 204 |
| Conread position: | 4-465 |
| Cow position: | chr16:2409018-2409492 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 4-465 |
| Cow position: | chr16:2725343-2725824 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 4-465 |
| Cow position: | chr16:3331787-3331321 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 139 |
| Conread position: | 4-465 |
| Cow position: | chr16:3770134-3770613 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 204 |
| Conread position: | 4-465 |
| Cow position: | chr16:5891882-5891410 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 4-465 |
| Cow position: | chr16:7674582-7675059 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 412 |
| Conread position: | 4-465 |
| Cow position: | chr16:10373805-10374282 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 239 |
| Conread position: | 4-465 |
| Cow position: | chr16:10440119-10439647 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 4-465 |
| Cow position: | chr16:16230189-16229704 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 171 |
| Conread position: | 4-465 |
| Cow position: | chr16:16268017-16268486 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 4-465 |
| Cow position: | chr16:23250111-23250580 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 26, 65 |
| Conread position: | 4-465 |
| Cow position: | chr16:23365035-23365509 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 20 |
| Conread position: | 4-465 |
| Cow position: | chr16:25343853-25343373 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr16:25455585-25456062 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr16:26665593-26665130 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 172 |
| Conread position: | 4-465 |
| Cow position: | chr16:26991071-26991547 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 184 |
| Conread position: | 4-465 |
| Cow position: | chr16:28168441-28168921 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr16:39034826-39035295 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 26 |
| Conread position: | 4-465 |
| Cow position: | chr16:41161593-41162068 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr16:42162620-42162143 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 4-465 |
| Cow position: | chr16:43895386-43895865 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 203 |
| Conread position: | 4-465 |
| Cow position: | chr16:47787835-47787354 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-486 |
| Cow position: | chr16:2236893-2237400 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 189 |
| Conread position: | 6-465 |
| Cow position: | chr16:29035772-29035298 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 7-394 |
| Cow position: | chr16:41564258-41563860 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 129 |
| Conread position: | 7-449 |
| Cow position: | chr16:1565803-1566256 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 23 |
| Conread position: | 7-461 |
| Cow position: | chr16:46102836-46103303 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 114 |
| Conread position: | 19-465 |
| Cow position: | chr16:16992899-16992450 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 25 |
| Conread position: | 21-465 |
| Cow position: | chr16:12536087-12536550 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 28-464 |
| Cow position: | chr16:49254400-49254848 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 92 |
| Conread position: | 28-470 |
| Cow position: | chr16:25948460-25948903 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 7 |
| Conread position: | 31-465 |
| Cow position: | chr16:23876675-23877127 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 31-466 |
| Cow position: | chr16:20667048-20666599 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 111 |
| Conread position: | 42-465 |
| Cow position: | chr16:2890674-2891116 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 43-342 |
| Cow position: | chr16:27980536-27980843 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 241, 99 |
| Conread position: | 45-465 |
| Cow position: | chr16:39645487-39645056 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 164 |
| Conread position: | 48-425 |
| Cow position: | chr16:28269234-28269619 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 144 |
| Conread position: | 59-420 |
| Cow position: | chr16:56915288-56915662 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 229, 49 |
| Conread position: | 77-465 |
| Cow position: | chr16:25463105-25463505 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 63 |
| Conread position: | 83-383 |
| Cow position: | chr16:25126755-25127066 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 226 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 205, 78 |
| Conread position: | 87-463 |
| Cow position: | chr16:43845425-43845816 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 42 |
| Conread position: | 98-465 |
| Cow position: | chr16:48910051-48910428 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 114 |
| Conread position: | 108-465 |
| Cow position: | chr16:25443404-25443029 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 180, 90 |
| Conread position: | 115-465 |
| Cow position: | chr16:4798953-4799314 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 77 |
| Conread position: | 119-465 |
| Cow position: | chr16:5663601-5663243 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 169, 52 |
| Conread position: | 120-448 |
| Cow position: | chr16:21017495-21017147 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 159-465 |
| Cow position: | chr16:15568976-15568655 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 131, 83 |
| Conread position: | 160-465 |
| Cow position: | chr16:41626530-41626209 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 127, 87 |
| Conread position: | 173-463 |
| Cow position: | chr16:25259512-25259206 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 115, 33 |
| Conread position: | 185-461 |
| Cow position: | chr16:23789839-23789544 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 99, 162 |
| Conread position: | 198-461 |
| Cow position: | chr16:25742553-25742283 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 143 |
Show alignments to all cow chromosomes.