Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-369 |
| Cow position: | chr17:1569941-1570319 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 203 |
| Conread position: | 1-456 |
| Cow position: | chr17:2176429-2175949 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 368 |
| Conread position: | 1-463 |
| Cow position: | chr17:7561511-7561989 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 20 |
| Conread position: | 2-347 |
| Cow position: | chr17:14233160-14233518 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 2-389 |
| Cow position: | chr17:43146129-43146526 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 2-460 |
| Cow position: | chr17:9752237-9751783 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 191 |
| Conread position: | 2-465 |
| Cow position: | chr17:14294102-14294577 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 39 |
| Conread position: | 2-465 |
| Cow position: | chr17:18590872-18590399 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 142 |
| Conread position: | 2-465 |
| Cow position: | chr17:21420393-21419911 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 76 |
| Conread position: | 2-469 |
| Cow position: | chr17:604620-605097 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 77 |
| Conread position: | 4-363 |
| Cow position: | chr17:11380745-11381119 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 237 |
| Conread position: | 4-458 |
| Cow position: | chr17:3284316-3283863 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 4-461 |
| Cow position: | chr17:3742605-3742128 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-463 |
| Cow position: | chr17:15140901-15141370 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 26 |
| Conread position: | 4-464 |
| Cow position: | chr17:5307294-5307774 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-464 |
| Cow position: | chr17:25738742-25738262 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr17:137084-136604 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 239 |
| Conread position: | 4-465 |
| Cow position: | chr17:1705842-1705365 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 4-465 |
| Cow position: | chr17:1882711-1882237 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 139 |
| Conread position: | 4-465 |
| Cow position: | chr17:8211096-8210618 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr17:14214592-14215061 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 4-465 |
| Cow position: | chr17:15709548-15710029 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr17:16855653-16856137 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr17:17257960-17257482 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 26 |
| Conread position: | 4-465 |
| Cow position: | chr17:18124495-18124964 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 134 |
| Conread position: | 4-465 |
| Cow position: | chr17:19979685-19980161 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 4-465 |
| Cow position: | chr17:20085334-20085805 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 118 |
| Conread position: | 4-465 |
| Cow position: | chr17:21768670-21769147 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 4-465 |
| Cow position: | chr17:22107201-22107682 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 4-465 |
| Cow position: | chr17:24784611-24784136 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 181 |
| Conread position: | 4-465 |
| Cow position: | chr17:27792338-27792805 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 189 |
| Conread position: | 4-467 |
| Cow position: | chr17:15438240-15437760 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 318 |
| Conread position: | 4-470 |
| Cow position: | chr17:15853165-15852666 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 5-368 |
| Cow position: | chr17:20079442-20079815 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 161 |
| Conread position: | 5-456 |
| Cow position: | chr17:10322403-10321957 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 311 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 5-464 |
| Cow position: | chr17:8204370-8203905 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 201 |
| Conread position: | 6-461 |
| Cow position: | chr17:2032675-2032204 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 136 |
| Conread position: | 7-464 |
| Cow position: | chr17:6070974-6070508 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 23 |
| Conread position: | 7-465 |
| Cow position: | chr17:6262302-6261826 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 201 |
| Conread position: | 7-465 |
| Cow position: | chr17:33282901-33283369 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 8-467 |
| Cow position: | chr17:1458833-1458354 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 256 |
| Conread position: | 13-440 |
| Cow position: | chr17:4210447-4210004 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 161 |
| Conread position: | 16-363 |
| Cow position: | chr17:2245617-2245970 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 22 |
| Conread position: | 17-464 |
| Cow position: | chr17:15327713-15327256 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 24 |
| Conread position: | 18-465 |
| Cow position: | chr17:18593659-18593196 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 105, 59 |
| Conread position: | 19-465 |
| Cow position: | chr17:2553832-2554297 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 0 |
| Conread position: | 24-463 |
| Cow position: | chr17:1785586-1786032 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 40 |
| Conread position: | 31-465 |
| Cow position: | chr17:29825548-29826001 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 41-445 |
| Cow position: | chr17:2005501-2005098 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 121 |
| Conread position: | 44-465 |
| Cow position: | chr17:34575162-34574721 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 55-461 |
| Cow position: | chr17:3236336-3235929 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 132, 22 |
| Conread position: | 62-465 |
| Cow position: | chr17:28026105-28026529 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 110-465 |
| Cow position: | chr17:43990839-43990472 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 178, 11 |
| Conread position: | 131-465 |
| Cow position: | chr17:19216393-19216741 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 132-465 |
| Cow position: | chr17:14897275-14896928 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 156, 27 |
| Conread position: | 147-463 |
| Cow position: | chr17:33791064-33790732 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 153-465 |
| Cow position: | chr17:14376531-14376216 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 139, 34 |
| Conread position: | 156-465 |
| Cow position: | chr17:36284327-36283998 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 159-465 |
| Cow position: | chr17:22562192-22561873 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 117, 30 |
| Conread position: | 201-363 |
| Cow position: | chr17:35990371-35990539 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 41 |
| Conread position: | 202-464 |
| Cow position: | chr17:23721522-23721239 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 242-465 |
| Cow position: | chr17:39050647-39050405 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 291-456 |
| Cow position: | chr17:3706669-3706839 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 48 |
Show alignments to all cow chromosomes.