Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-465 |
| Cow position: | chr18:14418640-14418154 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-368 |
| Cow position: | chr18:12994662-12994287 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 16, 122 |
| Conread position: | 2-461 |
| Cow position: | chr18:4979139-4979612 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 2-465 |
| Cow position: | chr18:16135987-16136492 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 3-352 |
| Cow position: | chr18:29120691-29120342 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 3-463 |
| Cow position: | chr18:16151174-16150710 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 317 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 3-467 |
| Cow position: | chr18:33344780-33344320 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 106 |
| Conread position: | 4-338 |
| Cow position: | chr18:14128627-14128961 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 4-363 |
| Cow position: | chr18:23801683-23801313 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 168 |
| Conread position: | 4-363 |
| Cow position: | chr18:28969626-28969996 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-444 |
| Cow position: | chr18:36775936-36775473 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 4-450 |
| Cow position: | chr18:55417385-55416925 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-463 |
| Cow position: | chr18:52655473-52654998 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 4-465 |
| Cow position: | chr18:603804-604273 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr18:19355022-19354549 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 65 |
| Conread position: | 4-465 |
| Cow position: | chr18:22182868-22183340 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-465 |
| Cow position: | chr18:23702422-23702901 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 203 |
| Conread position: | 4-465 |
| Cow position: | chr18:25353909-25353432 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr18:27168295-27167810 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-465 |
| Cow position: | chr18:27835424-27835903 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 185 |
| Conread position: | 4-465 |
| Cow position: | chr18:29863945-29864425 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 171 |
| Conread position: | 4-465 |
| Cow position: | chr18:30762297-30762778 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr18:32437441-32437922 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr18:36511281-36510803 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr18:37508625-37508148 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 4-465 |
| Cow position: | chr18:51344765-51344282 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 214 |
| Conread position: | 4-472 |
| Cow position: | chr18:52630598-52631072 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 5-337 |
| Cow position: | chr18:17323062-17322724 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 25 |
| Conread position: | 7-464 |
| Cow position: | chr18:1047005-1046535 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 118 |
| Conread position: | 7-465 |
| Cow position: | chr18:37700836-37701306 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 23 |
| Conread position: | 7-469 |
| Cow position: | chr18:48390602-48390137 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 8-456 |
| Cow position: | chr18:37156086-37156556 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 13 |
| Conread position: | 16-465 |
| Cow position: | chr18:16146381-16146828 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 21-464 |
| Cow position: | chr18:40483648-40483191 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 39 |
| Conread position: | 24-465 |
| Cow position: | chr18:18853844-18853402 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 300 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 14, 149 |
| Conread position: | 31-465 |
| Cow position: | chr18:16464228-16464675 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 139 |
| Conread position: | 31-465 |
| Cow position: | chr18:43129033-43128590 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 87 |
| Conread position: | 38-469 |
| Cow position: | chr18:15853240-15852799 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 296 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 90, 46 |
| Conread position: | 56-465 |
| Cow position: | chr18:23441219-23441637 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 60-465 |
| Cow position: | chr18:25941507-25941083 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 64-465 |
| Cow position: | chr18:9661315-9660899 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 6 |
| Conread position: | 76-480 |
| Cow position: | chr18:19457457-19457032 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 254 |
| Conread position: | 90-368 |
| Cow position: | chr18:17998874-17999168 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 101-465 |
| Cow position: | chr18:28767364-28766982 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 18 |
| Conread position: | 108-465 |
| Cow position: | chr18:14132951-14132570 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 132-465 |
| Cow position: | chr18:47744027-47743677 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 189 |
| Conread position: | 143-383 |
| Cow position: | chr18:37664921-37664668 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 151-450 |
| Cow position: | chr18:52713547-52713240 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 21 |
| Conread position: | 199-461 |
| Cow position: | chr18:32259472-32259749 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 225 |
| Conread position: | 230-457 |
| Cow position: | chr18:9723043-9722797 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
Show alignments to all cow chromosomes.