Cow genome map

Conread name: Lym2-sn16_A03.f

Conread position: 1-363
Cow position: chr2:5296388-5296024 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 67

Conread position: 1-383
Cow position: chr2:16321042-16320656 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 122

Conread position: 1-434
Cow position: chr2:3833404-3833844 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 103

Conread position: 1-460
Cow position: chr2:11685116-11684655 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 162

Conread position: 1-465
Cow position: chr2:28647505-28647985 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 206

Conread position: 1-465
Cow position: chr2:32063936-32064416 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 206

Conread position: 1-465
Cow position: chr2:52620890-52620419 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 206

Conread position: 1-465
Cow position: chr2:53331916-53331431 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-465
Cow position: chr2:73195095-73194618 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 160

Conread position: 2-338
Cow position: chr2:54695749-54695407 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 208

Conread position: 2-389
Cow position: chr2:1957065-1956679 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 273
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 285, 19

Conread position: 2-401
Cow position: chr2:18160833-18161234 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 40

Conread position: 2-426
Cow position: chr2:74860088-74859653 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 117

Conread position: 2-463
Cow position: chr2:4725092-4724607 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 2-463
Cow position: chr2:85691252-85690788 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 315
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 15, 97

Conread position: 2-465
Cow position: chr2:72738498-72738969 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 53

Conread position: 2-466
Cow position: chr2:44057921-44058393 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 59

Conread position: 2-467
Cow position: chr2:43106442-43105953 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 11

Conread position: 2-493
Cow position: chr2:20918053-20918510 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 3-349
Cow position: chr2:6291022-6290671 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 116

Conread position: 3-368
Cow position: chr2:19766771-19767148 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 248
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 109

Conread position: 3-461
Cow position: chr2:16333019-16332555 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 115

Conread position: 3-465
Cow position: chr2:85080828-85081290 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 117

Conread position: 4-363
Cow position: chr2:11704707-11704351 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 262
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 126

Conread position: 4-450
Cow position: chr2:16329186-16328749 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 201

Conread position: 4-456
Cow position: chr2:50079672-50079203 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-462
Cow position: chr2:54739593-54739119 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 34

Conread position: 4-464
Cow position: chr2:3839380-3838928 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 26

Conread position: 4-464
Cow position: chr2:24687788-24687316 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 26

Conread position: 4-465
Cow position: chr2:974263-974740 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr2:2182159-2182638 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr2:4452480-4451999 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr2:9956961-9957438 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 26

Conread position: 4-465
Cow position: chr2:9962961-9963438 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 26

Conread position: 4-465
Cow position: chr2:12478151-12478628 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 153

Conread position: 4-465
Cow position: chr2:13067894-13068363 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 26

Conread position: 4-465
Cow position: chr2:25886445-25886920 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 186

Conread position: 4-465
Cow position: chr2:41156300-41155825 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 62

Conread position: 4-465
Cow position: chr2:42668597-42669071 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 26

Conread position: 4-465
Cow position: chr2:43757530-43758010 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 34

Conread position: 4-465
Cow position: chr2:44093476-44093003 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 4-465
Cow position: chr2:46183425-46183905 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr2:50981041-50981516 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 182

Conread position: 4-465
Cow position: chr2:53542047-53541570 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 26

Conread position: 4-465
Cow position: chr2:57338069-57337591 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 333

Conread position: 4-465
Cow position: chr2:65936113-65936594 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-469
Cow position: chr2:44477720-44477238 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-470
Cow position: chr2:245785-246268 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 203

Conread position: 4-485
Cow position: chr2:57053674-57053177 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 34

Conread position: 5-363
Cow position: chr2:48360059-48359690 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 251
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 30, 167

Conread position: 5-368
Cow position: chr2:62816264-62815903 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 257
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 14, 145

Conread position: 5-456
Cow position: chr2:2205699-2206167 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 441

Conread position: 5-465
Cow position: chr2:16306191-16305730 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 323
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 41

Conread position: 6-461
Cow position: chr2:70709650-70709182 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 72

Conread position: 7-465
Cow position: chr2:7369781-7369310 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 194

Conread position: 7-465
Cow position: chr2:25027189-25027673 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 15-465
Cow position: chr2:10263318-10263782 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 207

Conread position: 23-465
Cow position: chr2:50325295-50324846 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 13

Conread position: 24-465
Cow position: chr2:11971203-11971645 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 301
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 296, 15

Conread position: 25-465
Cow position: chr2:50406078-50405630 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 34

Conread position: 27-465
Cow position: chr2:4385490-4385050 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 64

Conread position: 29-464
Cow position: chr2:11731968-11731515 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 334

Conread position: 32-465
Cow position: chr2:20896253-20896680 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 89

Conread position: 33-465
Cow position: chr2:52064839-52064389 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 0

Conread position: 37-465
Cow position: chr2:42330771-42331224 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 40

Conread position: 41-465
Cow position: chr2:55482118-55482549 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 378

Conread position: 44-465
Cow position: chr2:20890760-20891199 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 178

Conread position: 44-465
Cow position: chr2:67189663-67189224 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 61

Conread position: 49-464
Cow position: chr2:40455297-40454868 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 184

Conread position: 57-465
Cow position: chr2:36995778-36995391 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 286
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 291, 62

Conread position: 70-383
Cow position: chr2:66597079-66596752 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 81-374
Cow position: chr2:53972398-53972699 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 198
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 198, 106

Conread position: 90-383
Cow position: chr2:8747122-8747428 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 133

Conread position: 108-465
Cow position: chr2:28612084-28612453 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 184, 91

Conread position: 108-465
Cow position: chr2:60673818-60674194 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 322

Conread position: 109-465
Cow position: chr2:16023087-16023446 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 179, 83

Conread position: 109-465
Cow position: chr2:26903774-26904146 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 97

Conread position: 119-421
Cow position: chr2:1846180-1846484 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 32, 52

Conread position: 122-465
Cow position: chr2:11157135-11157492 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 246
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 172, 78

Conread position: 125-465
Cow position: chr2:6640796-6640437 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 0

Conread position: 131-465
Cow position: chr2:35357975-35357624 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 163, 108

Conread position: 138-465
Cow position: chr2:34500440-34500786 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 144-465
Cow position: chr2:363096-363436 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 144, 0

Conread position: 146-374
Cow position: chr2:58473704-58473940 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 102

Conread position: 146-382
Cow position: chr2:36048297-36048545 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 139, 46

Conread position: 148-465
Cow position: chr2:12988072-12987752 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 140, 41

Conread position: 148-465
Cow position: chr2:81259140-81258811 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 140, 50

Conread position: 156-465
Cow position: chr2:280734-281061 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 129, 303

Conread position: 158-461
Cow position: chr2:4923605-4923918 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 236
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 122, 161

Conread position: 159-465
Cow position: chr2:32640899-32640573 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 69, 0

Conread position: 169-465
Cow position: chr2:26872000-26871682 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 101, 60

Conread position: 171-450
Cow position: chr2:12329572-12329283 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 214
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 117, 21

Conread position: 174-463
Cow position: chr2:44988665-44988955 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 170, 8

Conread position: 206-465
Cow position: chr2:59423419-59423141 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 224-465
Cow position: chr2:48816159-48815898 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.