Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-435 |
| Cow position: | chr21:41966-41514 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 203 |
| Conread position: | 1-465 |
| Cow position: | chr21:1195281-1194805 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 108 |
| Conread position: | 1-465 |
| Cow position: | chr21:27031985-27031520 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 1-465 |
| Cow position: | chr21:27148810-27149295 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 333 |
| Conread position: | 1-470 |
| Cow position: | chr21:2513590-2513108 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 23 |
| Conread position: | 2-465 |
| Cow position: | chr21:22943359-22942876 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 189 |
| Conread position: | 2-465 |
| Cow position: | chr21:34072833-34073316 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 367 |
| Conread position: | 3-368 |
| Cow position: | chr21:24647559-24647193 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 3-467 |
| Cow position: | chr21:46291121-46290651 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 324 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 4-363 |
| Cow position: | chr21:2665399-2665771 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 4-460 |
| Cow position: | chr21:26699924-26700394 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 389 |
| Conread position: | 4-463 |
| Cow position: | chr21:37373965-37373488 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-464 |
| Cow position: | chr21:34902646-34903111 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 20 |
| Conread position: | 4-465 |
| Cow position: | chr21:4092074-4091598 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 167 |
| Conread position: | 4-465 |
| Cow position: | chr21:4482037-4481573 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 266 |
| Conread position: | 4-465 |
| Cow position: | chr21:5019886-5019406 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 207 |
| Conread position: | 4-465 |
| Cow position: | chr21:11291429-11290949 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 4-465 |
| Cow position: | chr21:26634418-26634897 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 4-465 |
| Cow position: | chr21:27068220-27068701 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 268 |
| Conread position: | 4-465 |
| Cow position: | chr21:27286185-27285709 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 225 |
| Conread position: | 4-465 |
| Cow position: | chr21:28615058-28614579 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 4-465 |
| Cow position: | chr21:32397310-32397791 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr21:34656701-34656213 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 92 |
| Conread position: | 4-465 |
| Cow position: | chr21:36375729-36375253 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 441 |
| Conread position: | 4-465 |
| Cow position: | chr21:39225320-39225797 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr21:44763221-44763696 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-465 |
| Cow position: | chr21:47648076-47647597 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 210 |
| Conread position: | 4-470 |
| Cow position: | chr21:2418941-2418461 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 5-414 |
| Cow position: | chr21:4078787-4078373 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 196 |
| Conread position: | 5-464 |
| Cow position: | chr21:7155071-7154598 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 5-465 |
| Cow position: | chr21:21171566-21172034 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 333 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 25, 107 |
| Conread position: | 8-465 |
| Cow position: | chr21:4036982-4036513 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 41 |
| Conread position: | 14-465 |
| Cow position: | chr21:38024821-38024361 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 100 |
| Conread position: | 15-465 |
| Cow position: | chr21:21026210-21025733 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 17-465 |
| Cow position: | chr21:49091714-49092178 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 102 |
| Conread position: | 22-467 |
| Cow position: | chr21:4595893-4596346 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 65 |
| Conread position: | 24-465 |
| Cow position: | chr21:36978188-36978642 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 92 |
| Conread position: | 25-465 |
| Cow position: | chr21:28987853-28987404 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 92 |
| Conread position: | 27-465 |
| Cow position: | chr21:6966750-6967199 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 162 |
| Conread position: | 31-465 |
| Cow position: | chr21:3805639-3805186 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 75 |
| Conread position: | 50-465 |
| Cow position: | chr21:9894843-9894408 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 87-465 |
| Cow position: | chr21:4738334-4737925 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 146, 80 |
| Conread position: | 91-349 |
| Cow position: | chr21:34551498-34551763 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 97-365 |
| Cow position: | chr21:47976483-47976205 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 97-465 |
| Cow position: | chr21:27610095-27610481 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 375 |
| Conread position: | 119-465 |
| Cow position: | chr21:29949340-29949703 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 70 |
| Conread position: | 138-465 |
| Cow position: | chr21:28258021-28257679 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 138, 104 |
| Conread position: | 154-464 |
| Cow position: | chr21:31640495-31640175 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 154-465 |
| Cow position: | chr21:11508200-11507871 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 100, 108 |
| Conread position: | 159-465 |
| Cow position: | chr21:40269087-40269409 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 120, 47 |
| Conread position: | 163-465 |
| Cow position: | chr21:362312-361989 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 127, 70 |
| Conread position: | 171-427 |
| Cow position: | chr21:35403319-35403586 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 171-464 |
| Cow position: | chr21:31584-31284 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 89, 72 |
| Conread position: | 226-465 |
| Cow position: | chr21:469416-469165 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 209 |
| Conread position: | 229-465 |
| Cow position: | chr21:11470239-11470020 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 189, 9 |
| Conread position: | 234-465 |
| Cow position: | chr21:30564175-30563927 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 298-465 |
| Cow position: | chr21:34158474-34158644 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 82 |
Show alignments to all cow chromosomes.