Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-465 |
| Cow position: | chr28:5210730-5210249 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 206 |
| Conread position: | 1-465 |
| Cow position: | chr28:8381655-8381174 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 29 |
| Conread position: | 1-465 |
| Cow position: | chr28:8718363-8718832 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 206 |
| Conread position: | 1-465 |
| Cow position: | chr28:33254931-33254447 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-351 |
| Cow position: | chr28:28441361-28441010 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 2-461 |
| Cow position: | chr28:21323684-21323208 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 209 |
| Conread position: | 2-464 |
| Cow position: | chr28:23024790-23024345 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 117 |
| Conread position: | 2-465 |
| Cow position: | chr28:29760020-29760499 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 2-470 |
| Cow position: | chr28:22579346-22578857 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 3-464 |
| Cow position: | chr28:917948-918442 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 3-464 |
| Cow position: | chr28:933640-934135 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 4-363 |
| Cow position: | chr28:22230723-22231088 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 230 |
| Conread position: | 4-450 |
| Cow position: | chr28:30534456-30534921 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 458 |
| Conread position: | 4-456 |
| Cow position: | chr28:21568512-21568042 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 4-460 |
| Cow position: | chr28:1955974-1955501 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 4-464 |
| Cow position: | chr28:24885466-24884984 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 4-465 |
| Cow position: | chr28:1165280-1165760 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 4-465 |
| Cow position: | chr28:1215225-1215703 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 203 |
| Conread position: | 4-465 |
| Cow position: | chr28:1384833-1385304 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 4-465 |
| Cow position: | chr28:2087070-2086599 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 192 |
| Conread position: | 4-465 |
| Cow position: | chr28:5636435-5635966 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 202 |
| Conread position: | 4-465 |
| Cow position: | chr28:10302444-10301969 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 25 |
| Conread position: | 4-465 |
| Cow position: | chr28:12407608-12408085 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr28:21379142-21378664 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 188 |
| Conread position: | 4-465 |
| Cow position: | chr28:23310708-23311178 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 204 |
| Conread position: | 4-465 |
| Cow position: | chr28:25702301-25702759 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 27 |
| Conread position: | 4-465 |
| Cow position: | chr28:29822793-29822330 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 203 |
| Conread position: | 4-465 |
| Cow position: | chr28:34582529-34582048 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 4-465 |
| Cow position: | chr28:34596852-34596385 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 388 |
| Conread position: | 4-485 |
| Cow position: | chr28:33639175-33638676 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 482 |
| Conread position: | 5-465 |
| Cow position: | chr28:15686011-15685541 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 25 |
| Conread position: | 8-465 |
| Cow position: | chr28:7004609-7004134 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 230 |
| Conread position: | 9-465 |
| Cow position: | chr28:30960214-30959743 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 17-383 |
| Cow position: | chr28:18517553-18517931 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 246 |
| Conread position: | 23-465 |
| Cow position: | chr28:17371979-17372410 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 25-461 |
| Cow position: | chr28:32303634-32304101 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 189 |
| Conread position: | 27-463 |
| Cow position: | chr28:25040859-25041302 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 25 |
| Conread position: | 27-465 |
| Cow position: | chr28:7829074-7828626 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 92 |
| Conread position: | 33-465 |
| Cow position: | chr28:15352524-15352955 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 51 |
| Conread position: | 48-465 |
| Cow position: | chr28:12152920-12152487 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 0 |
| Conread position: | 55-465 |
| Cow position: | chr28:22040840-22041265 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 178 |
| Conread position: | 68-463 |
| Cow position: | chr28:24670141-24669728 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 185 |
| Conread position: | 68-465 |
| Cow position: | chr28:3013427-3013839 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 15 |
| Conread position: | 94-467 |
| Cow position: | chr28:30920769-30921147 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 111 |
| Conread position: | 105-465 |
| Cow position: | chr28:8785943-8785564 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 297 |
| Conread position: | 108-465 |
| Cow position: | chr28:26423761-26424127 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 171, 95 |
| Conread position: | 123-465 |
| Cow position: | chr28:25675513-25675879 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 165, 199 |
| Conread position: | 142-465 |
| Cow position: | chr28:5568617-5568287 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 143, 80 |
| Conread position: | 144-439 |
| Cow position: | chr28:5815842-5815539 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 139, 80 |
| Conread position: | 153-465 |
| Cow position: | chr28:30806229-30805898 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 181-465 |
| Cow position: | chr28:34730362-34730059 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 186-466 |
| Cow position: | chr28:10293893-10293602 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 194-465 |
| Cow position: | chr28:1460523-1460233 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 211-465 |
| Cow position: | chr28:22258745-22259016 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 173 |
Show alignments to all cow chromosomes.