Cow genome map

Conread name: Lym2-sn16_A03.f

Conread position: 1-342
Cow position: chr3:7326752-7326413 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 34

Conread position: 1-460
Cow position: chr3:18861936-18861457 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-463
Cow position: chr3:35885844-35886330 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 29

Conread position: 1-463
Cow position: chr3:40102310-40102777 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 20

Conread position: 1-463
Cow position: chr3:57742019-57741543 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-465
Cow position: chr3:596614-596143 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 66

Conread position: 1-465
Cow position: chr3:10243147-10242671 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 50

Conread position: 1-465
Cow position: chr3:18814000-18813522 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 142

Conread position: 1-465
Cow position: chr3:19946736-19946260 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 229

Conread position: 1-465
Cow position: chr3:24443601-24444085 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-465
Cow position: chr3:37971545-37971064 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 206

Conread position: 1-465
Cow position: chr3:70889769-70889299 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 30

Conread position: 1-465
Cow position: chr3:73303998-73303534 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 30

Conread position: 1-467
Cow position: chr3:3983129-3982643 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 429

Conread position: 2-465
Cow position: chr3:19782189-19781715 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 91

Conread position: 2-470
Cow position: chr3:38496270-38495791 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 210

Conread position: 3-351
Cow position: chr3:38254235-38253878 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 16, 39

Conread position: 3-463
Cow position: chr3:50124507-50124980 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 17

Conread position: 4-334
Cow position: chr3:64812953-64813294 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 129

Conread position: 4-363
Cow position: chr3:53048289-53048666 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 168

Conread position: 4-363
Cow position: chr3:61676186-61675820 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 37

Conread position: 4-456
Cow position: chr3:21004306-21003840 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 102

Conread position: 4-460
Cow position: chr3:49003661-49003185 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-463
Cow position: chr3:56337461-56337943 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:2708380-2708852 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 118

Conread position: 4-465
Cow position: chr3:3525518-3525051 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 72

Conread position: 4-465
Cow position: chr3:7156225-7156701 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 4-465
Cow position: chr3:13036180-13035699 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:16225371-16224903 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 26

Conread position: 4-465
Cow position: chr3:18113195-18113677 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:19754471-19754945 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr3:19798662-19799143 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 4-465
Cow position: chr3:19941406-19940939 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 150

Conread position: 4-465
Cow position: chr3:26743381-26743862 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:27865665-27865189 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 92

Conread position: 4-465
Cow position: chr3:29574630-29575103 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 186

Conread position: 4-465
Cow position: chr3:30616447-30616925 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 41

Conread position: 4-465
Cow position: chr3:30989754-30990235 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:32620551-32621032 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:40337653-40338130 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 32

Conread position: 4-465
Cow position: chr3:41082657-41082183 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 26

Conread position: 4-465
Cow position: chr3:46505056-46504580 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 94

Conread position: 4-465
Cow position: chr3:48525237-48524748 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr3:48602743-48602267 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 204

Conread position: 4-465
Cow position: chr3:49563500-49563024 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:64025640-64026120 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:66622706-66622228 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr3:66969390-66969871 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 0

Conread position: 4-465
Cow position: chr3:68697477-68697958 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:68871259-68871739 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr3:72389452-72388968 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 206

Conread position: 4-465
Cow position: chr3:75039355-75039838 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 4-465
Cow position: chr3:78024942-78025421 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 5-358
Cow position: chr3:3790127-3789765 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 56

Conread position: 5-464
Cow position: chr3:4030237-4029747 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 6-421
Cow position: chr3:25689136-25688732 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 8

Conread position: 7-465
Cow position: chr3:14862693-14862211 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 343

Conread position: 7-465
Cow position: chr3:49135073-49135547 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 200

Conread position: 7-465
Cow position: chr3:49542714-49543193 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 236

Conread position: 8-465
Cow position: chr3:27920934-27920460 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 74

Conread position: 16-465
Cow position: chr3:13724239-13724705 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 19

Conread position: 17-465
Cow position: chr3:46858808-46859275 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 0

Conread position: 25-465
Cow position: chr3:77366595-77367048 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 32

Conread position: 30-465
Cow position: chr3:2871260-2870806 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 399

Conread position: 31-467
Cow position: chr3:25998683-25999134 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 301
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 256, 48

Conread position: 45-461
Cow position: chr3:75185803-75185371 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 302
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 61, 51

Conread position: 54-451
Cow position: chr3:49742903-49742486 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 0

Conread position: 55-456
Cow position: chr3:64214657-64215063 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 32

Conread position: 57-465
Cow position: chr3:19590273-19590700 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 149

Conread position: 59-311
Cow position: chr3:77452719-77452475 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 17

Conread position: 69-368
Cow position: chr3:32361849-32361544 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 134, 8

Conread position: 76-375
Cow position: chr3:34040158-34040468 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 212, 130

Conread position: 76-465
Cow position: chr3:15053298-15053698 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 43

Conread position: 77-486
Cow position: chr3:27583260-27582849 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 278
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 214, 66

Conread position: 78-465
Cow position: chr3:36862039-36862439 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 235

Conread position: 80-364
Cow position: chr3:18205246-18205539 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 201, 50

Conread position: 97-342
Cow position: chr3:77426101-77425861 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 149, 101

Conread position: 98-447
Cow position: chr3:33325516-33325146 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 105-465
Cow position: chr3:46752021-46751639 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 264
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 39, 105

Conread position: 108-464
Cow position: chr3:63001223-63001594 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 259
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 142, 63

Conread position: 108-465
Cow position: chr3:21180312-21180685 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 98

Conread position: 114-465
Cow position: chr3:13477724-13477358 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 246
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 100, 17

Conread position: 119-465
Cow position: chr3:28670463-28670099 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 114

Conread position: 119-465
Cow position: chr3:37644662-37644303 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 253
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 169, 60

Conread position: 123-465
Cow position: chr3:54773295-54772957 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 250
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 226, 48

Conread position: 128-352
Cow position: chr3:80479131-80479353 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 122, 111

Conread position: 131-465
Cow position: chr3:21103101-21103438 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 153, 17

Conread position: 136-465
Cow position: chr3:4288441-4288102 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 248
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 148, 23

Conread position: 143-465
Cow position: chr3:5951836-5952175 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 226
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 226

Conread position: 144-467
Cow position: chr3:66044601-66044930 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 220
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 138, 54

Conread position: 148-465
Cow position: chr3:30329786-30330126 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 11, 0

Conread position: 157-467
Cow position: chr3:15657204-15657528 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 8

Conread position: 159-465
Cow position: chr3:2919968-2919636 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 78, 43

Conread position: 159-465
Cow position: chr3:58035353-58035042 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 129, 39

Conread position: 165-349
Cow position: chr3:69434706-69434901 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 26

Conread position: 224-465
Cow position: chr3:64013560-64013821 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 0

Show alignments to all cow chromosomes.