Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-349 |
| Cow position: | chr4:43869749-43869393 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 1-389 |
| Cow position: | chr4:36811626-36811250 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 132 |
| Conread position: | 1-465 |
| Cow position: | chr4:6488071-6488546 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 51 |
| Conread position: | 1-465 |
| Cow position: | chr4:25597188-25597665 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 205 |
| Conread position: | 1-465 |
| Cow position: | chr4:41957061-41956585 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 29 |
| Conread position: | 1-465 |
| Cow position: | chr4:43317349-43317829 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 331 |
| Conread position: | 1-467 |
| Cow position: | chr4:38931667-38931178 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 129, 30 |
| Conread position: | 2-421 |
| Cow position: | chr4:59356557-59356970 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 286, 19 |
| Conread position: | 2-456 |
| Cow position: | chr4:60044751-60045225 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 33 |
| Conread position: | 2-465 |
| Cow position: | chr4:21973362-21973847 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 2-465 |
| Cow position: | chr4:23890055-23890533 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 327 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 115, 20 |
| Conread position: | 2-465 |
| Cow position: | chr4:44900575-44900093 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 28 |
| Conread position: | 3-465 |
| Cow position: | chr4:9483527-9483990 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 139 |
| Conread position: | 4-361 |
| Cow position: | chr4:23305044-23305403 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 186 |
| Conread position: | 4-383 |
| Cow position: | chr4:14141413-14141024 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 110 |
| Conread position: | 4-421 |
| Cow position: | chr4:12606584-12607015 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 72 |
| Conread position: | 4-461 |
| Cow position: | chr4:10055244-10054779 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 24 |
| Conread position: | 4-462 |
| Cow position: | chr4:25877698-25877236 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 4-464 |
| Cow position: | chr4:3069224-3068759 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-464 |
| Cow position: | chr4:6863936-6864410 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 26 |
| Conread position: | 4-464 |
| Cow position: | chr4:17034206-17034681 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 226 |
| Conread position: | 4-464 |
| Cow position: | chr4:44594069-44594540 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-464 |
| Cow position: | chr4:61241577-61241103 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 26 |
| Conread position: | 4-465 |
| Cow position: | chr4:1047956-1048443 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 235 |
| Conread position: | 4-465 |
| Cow position: | chr4:3355665-3356145 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 4-465 |
| Cow position: | chr4:4418345-4417871 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 4-465 |
| Cow position: | chr4:5611697-5612176 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 421 |
| Conread position: | 4-465 |
| Cow position: | chr4:6266917-6267397 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-465 |
| Cow position: | chr4:16061577-16061096 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr4:16640907-16640429 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr4:21361819-21361349 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 26 |
| Conread position: | 4-465 |
| Cow position: | chr4:27336233-27335753 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr4:28174785-28175262 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 57 |
| Conread position: | 4-465 |
| Cow position: | chr4:41473546-41474025 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-465 |
| Cow position: | chr4:41961193-41960721 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 31 |
| Conread position: | 4-465 |
| Cow position: | chr4:58622230-58622711 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-469 |
| Cow position: | chr4:57986315-57985829 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 377 |
| Conread position: | 4-470 |
| Cow position: | chr4:11108775-11109249 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 5-465 |
| Cow position: | chr4:963036-963515 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 414 |
| Conread position: | 5-465 |
| Cow position: | chr4:34182409-34182878 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 5-465 |
| Cow position: | chr4:68109269-68109730 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 47 |
| Conread position: | 7-372 |
| Cow position: | chr4:34176690-34177069 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-465 |
| Cow position: | chr4:15459112-15459590 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 14-465 |
| Cow position: | chr4:2115714-2115252 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 17 |
| Conread position: | 14-465 |
| Cow position: | chr4:39234593-39235050 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 126 |
| Conread position: | 17-463 |
| Cow position: | chr4:6568661-6568201 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 240 |
| Conread position: | 21-465 |
| Cow position: | chr4:10883820-10883358 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 188 |
| Conread position: | 21-465 |
| Cow position: | chr4:56961219-56960757 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 178 |
| Conread position: | 26-465 |
| Cow position: | chr4:29033250-29032806 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 65-463 |
| Cow position: | chr4:67468215-67467817 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 12 |
| Conread position: | 77-465 |
| Cow position: | chr4:54971665-54971267 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 279 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 208, 10 |
| Conread position: | 112-465 |
| Cow position: | chr4:44779042-44779405 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 176, 73 |
| Conread position: | 119-467 |
| Cow position: | chr4:10392104-10391752 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 123-389 |
| Cow position: | chr4:47748926-47748655 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 130-465 |
| Cow position: | chr4:34222907-34222556 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 158, 123 |
| Conread position: | 131-360 |
| Cow position: | chr4:12458177-12458416 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 131-375 |
| Cow position: | chr4:13265420-13265671 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 59 |
| Conread position: | 131-461 |
| Cow position: | chr4:9133090-9133434 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 147 |
| Conread position: | 131-465 |
| Cow position: | chr4:30473382-30473034 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 75 |
| Conread position: | 131-465 |
| Cow position: | chr4:68836825-68837174 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 80 |
| Conread position: | 151-465 |
| Cow position: | chr4:12239094-12239419 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 139, 55 |
| Conread position: | 151-465 |
| Cow position: | chr4:60650588-60650267 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 137, 55 |
| Conread position: | 154-465 |
| Cow position: | chr4:17091719-17092049 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 166-461 |
| Cow position: | chr4:28833860-28833550 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 127, 67 |
| Conread position: | 166-465 |
| Cow position: | chr4:15460126-15460444 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 166-465 |
| Cow position: | chr4:60262045-60262357 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 122, 76 |
| Conread position: | 224-465 |
| Cow position: | chr4:51859560-51859300 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 228-465 |
| Cow position: | chr4:9648362-9648125 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 41 |
Show alignments to all cow chromosomes.