Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-369 |
| Cow position: | chr5:4387620-4387252 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 113 |
| Conread position: | 1-464 |
| Cow position: | chr5:46792250-46791767 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-464 |
| Cow position: | chr5:62203961-62203490 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 33 |
| Conread position: | 1-465 |
| Cow position: | chr5:5925562-5926046 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-465 |
| Cow position: | chr5:12730311-12730795 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-465 |
| Cow position: | chr5:27196681-27197161 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 2-375 |
| Cow position: | chr5:47080675-47080311 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 77 |
| Conread position: | 2-422 |
| Cow position: | chr5:25902071-25902498 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 2-465 |
| Cow position: | chr5:7583610-7584072 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 21 |
| Conread position: | 3-465 |
| Cow position: | chr5:1229183-1228707 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 186 |
| Conread position: | 4-378 |
| Cow position: | chr5:73486525-73486913 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-456 |
| Cow position: | chr5:26625807-26626283 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 4-464 |
| Cow position: | chr5:21523409-21523896 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 243 |
| Conread position: | 4-464 |
| Cow position: | chr5:34191329-34190855 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 4-464 |
| Cow position: | chr5:64779608-64780088 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr5:1339526-1340005 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 235 |
| Conread position: | 4-465 |
| Cow position: | chr5:4963977-4964453 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-465 |
| Cow position: | chr5:10854420-10854899 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-465 |
| Cow position: | chr5:10921239-10920760 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 4-465 |
| Cow position: | chr5:14543905-14544381 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 245 |
| Conread position: | 4-465 |
| Cow position: | chr5:23957931-23958406 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 35 |
| Conread position: | 4-465 |
| Cow position: | chr5:29031669-29031188 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr5:45702717-45702238 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 203 |
| Conread position: | 4-465 |
| Cow position: | chr5:49222100-49222582 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 4-465 |
| Cow position: | chr5:54786712-54787198 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr5:54928517-54928997 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 95 |
| Conread position: | 4-465 |
| Cow position: | chr5:58190358-58190839 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr5:58244425-58244903 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 4-465 |
| Cow position: | chr5:59063038-59062559 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 4-465 |
| Cow position: | chr5:59145770-59145288 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-469 |
| Cow position: | chr5:6152495-6152977 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 162 |
| Conread position: | 5-363 |
| Cow position: | chr5:46626871-46627234 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 17, 176 |
| Conread position: | 5-463 |
| Cow position: | chr5:58550384-58549928 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 25 |
| Conread position: | 7-470 |
| Cow position: | chr5:49521111-49520627 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 13-465 |
| Cow position: | chr5:14657108-14657577 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 179 |
| Conread position: | 14-464 |
| Cow position: | chr5:48226192-48226652 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 70 |
| Conread position: | 17-465 |
| Cow position: | chr5:7276215-7275749 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 20-464 |
| Cow position: | chr5:57001882-57001412 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 91 |
| Conread position: | 21-465 |
| Cow position: | chr5:58198401-58197941 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 185 |
| Conread position: | 43-465 |
| Cow position: | chr5:10773901-10774339 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 0 |
| Conread position: | 51-465 |
| Cow position: | chr5:10841044-10841457 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 155 |
| Conread position: | 81-464 |
| Cow position: | chr5:32775095-32774695 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 99-465 |
| Cow position: | chr5:13407898-13407514 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 51 |
| Conread position: | 100-348 |
| Cow position: | chr5:49909926-49909672 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 133, 13 |
| Conread position: | 109-465 |
| Cow position: | chr5:4683507-4683881 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 204 |
| Conread position: | 122-421 |
| Cow position: | chr5:47358997-47358684 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 164, 81 |
| Conread position: | 137-465 |
| Cow position: | chr5:39392828-39393169 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 139-465 |
| Cow position: | chr5:41066442-41066097 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 144-465 |
| Cow position: | chr5:16101821-16102150 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 153-465 |
| Cow position: | chr5:3823134-3822811 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 140, 53 |
| Conread position: | 153-465 |
| Cow position: | chr5:9056909-9056578 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 153-469 |
| Cow position: | chr5:11288681-11289009 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 159-465 |
| Cow position: | chr5:5665359-5665677 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 167-375 |
| Cow position: | chr5:12680587-12680806 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 126, 33 |
| Conread position: | 172-461 |
| Cow position: | chr5:280421-280115 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 116, 283 |
| Conread position: | 183-368 |
| Cow position: | chr5:47470007-47469812 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 185-368 |
| Cow position: | chr5:29768338-29768143 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 100, 13 |
| Conread position: | 202-465 |
| Cow position: | chr5:76097251-76096978 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.