Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-439 |
| Cow position: | chr6:40158964-40159412 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 154 |
| Conread position: | 1-465 |
| Cow position: | chr6:59618603-59618142 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 2-383 |
| Cow position: | chr6:41676475-41676081 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 2-465 |
| Cow position: | chr6:66746918-66746421 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 2-465 |
| Cow position: | chr6:66838648-66838169 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 2-465 |
| Cow position: | chr6:67266809-67266312 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 3-421 |
| Cow position: | chr6:6162661-6162236 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 4-368 |
| Cow position: | chr6:29479529-29479147 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 204 |
| Conread position: | 4-375 |
| Cow position: | chr6:8536759-8537152 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-383 |
| Cow position: | chr6:37478756-37478369 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 4-398 |
| Cow position: | chr6:29281832-29281435 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 237, 17 |
| Conread position: | 4-421 |
| Cow position: | chr6:2580954-2580531 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 128 |
| Conread position: | 4-457 |
| Cow position: | chr6:18986554-18986096 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 201 |
| Conread position: | 4-463 |
| Cow position: | chr6:38874124-38874599 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-464 |
| Cow position: | chr6:19104375-19104851 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 204 |
| Conread position: | 4-465 |
| Cow position: | chr6:49038-49517 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 225 |
| Conread position: | 4-465 |
| Cow position: | chr6:183008-183481 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 185 |
| Conread position: | 4-465 |
| Cow position: | chr6:1275459-1275941 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 239 |
| Conread position: | 4-465 |
| Cow position: | chr6:1536242-1535767 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 442 |
| Conread position: | 4-465 |
| Cow position: | chr6:1820092-1820567 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 134 |
| Conread position: | 4-465 |
| Cow position: | chr6:2377238-2376761 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 230 |
| Conread position: | 4-465 |
| Cow position: | chr6:3151763-3151289 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 4-465 |
| Cow position: | chr6:6094768-6094292 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 26 |
| Conread position: | 4-465 |
| Cow position: | chr6:7138801-7139279 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr6:11722660-11723140 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 328 |
| Conread position: | 4-465 |
| Cow position: | chr6:13308851-13309325 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr6:13849609-13849131 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 16 |
| Conread position: | 4-465 |
| Cow position: | chr6:13979297-13978811 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 258 |
| Conread position: | 4-465 |
| Cow position: | chr6:15138632-15139112 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 235 |
| Conread position: | 4-465 |
| Cow position: | chr6:16767300-16767781 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 160 |
| Conread position: | 4-465 |
| Cow position: | chr6:17048843-17048371 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr6:17595751-17596234 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 4-465 |
| Cow position: | chr6:18514072-18513611 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 26 |
| Conread position: | 4-465 |
| Cow position: | chr6:18912940-18913422 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 388 |
| Conread position: | 4-465 |
| Cow position: | chr6:20351555-20352036 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr6:30272353-30272835 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr6:33465500-33465028 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 4-465 |
| Cow position: | chr6:35874175-35874655 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 183 |
| Conread position: | 4-465 |
| Cow position: | chr6:37387116-37386638 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr6:38274106-38273637 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 171 |
| Conread position: | 4-465 |
| Cow position: | chr6:43620265-43619792 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 31 |
| Conread position: | 4-465 |
| Cow position: | chr6:43791038-43791523 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 242 |
| Conread position: | 4-465 |
| Cow position: | chr6:51717080-51716600 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr6:55238229-55237747 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr6:64813494-64813958 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 4-467 |
| Cow position: | chr6:47040664-47041133 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 4-470 |
| Cow position: | chr6:16592507-16592024 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 5-465 |
| Cow position: | chr6:39331997-39332472 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 25 |
| Conread position: | 13-393 |
| Cow position: | chr6:16624348-16623975 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 279, 72 |
| Conread position: | 15-465 |
| Cow position: | chr6:44148028-44148489 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 306 |
| Conread position: | 18-364 |
| Cow position: | chr6:50655490-50655133 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 112, 176 |
| Conread position: | 21-464 |
| Cow position: | chr6:22931398-22931862 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 317 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 15, 163 |
| Conread position: | 24-464 |
| Cow position: | chr6:58603993-58603548 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 110 |
| Conread position: | 25-493 |
| Cow position: | chr6:10611353-10610874 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 97 |
| Conread position: | 31-465 |
| Cow position: | chr6:11870419-11870874 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 31-465 |
| Cow position: | chr6:40277580-40277123 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 60 |
| Conread position: | 42-465 |
| Cow position: | chr6:33810135-33809693 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 76-465 |
| Cow position: | chr6:57472270-57471858 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 212, 28 |
| Conread position: | 87-426 |
| Cow position: | chr6:13696860-13697218 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 34, 104 |
| Conread position: | 87-465 |
| Cow position: | chr6:22999952-22999552 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 142, 25 |
| Conread position: | 87-465 |
| Cow position: | chr6:65844073-65843668 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 125-465 |
| Cow position: | chr6:27171988-27171640 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 133-465 |
| Cow position: | chr6:15895389-15895739 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 155, 75 |
| Conread position: | 158-463 |
| Cow position: | chr6:27347058-27346765 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 65 |
| Conread position: | 162-465 |
| Cow position: | chr6:67212525-67212839 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 181-465 |
| Cow position: | chr6:21890609-21890311 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 181-465 |
| Cow position: | chr6:46479488-46479185 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 192-465 |
| Cow position: | chr6:32633168-32632876 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 201-461 |
| Cow position: | chr6:39956186-39955918 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 37 |
| Conread position: | 228-465 |
| Cow position: | chr6:55785953-55785697 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 290-465 |
| Cow position: | chr6:60514293-60514108 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 294-465 |
| Cow position: | chr6:43431117-43431297 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.