Cow genome map

Conread name: Lym2-sn16_A03.f

Conread position: 1-349
Cow position: chr7:20368489-20368846 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 239
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 16, 153

Conread position: 1-361
Cow position: chr7:33069871-33070241 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 206

Conread position: 1-383
Cow position: chr7:49071379-49071776 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 198

Conread position: 1-456
Cow position: chr7:39596707-39597179 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 45

Conread position: 1-464
Cow position: chr7:39794485-39794003 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 1-465
Cow position: chr7:113246-112759 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 194

Conread position: 1-465
Cow position: chr7:1368066-1368534 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 92

Conread position: 1-465
Cow position: chr7:14212774-14213235 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 144

Conread position: 1-465
Cow position: chr7:21232377-21232858 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 29

Conread position: 1-465
Cow position: chr7:24805858-24806337 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 250

Conread position: 1-465
Cow position: chr7:57025425-57025902 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 51

Conread position: 2-450
Cow position: chr7:99934-100402 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 50

Conread position: 2-461
Cow position: chr7:62393144-62392679 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 326
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 23, 64

Conread position: 2-465
Cow position: chr7:21314518-21314048 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 22

Conread position: 2-467
Cow position: chr7:22760258-22759787 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 94

Conread position: 3-465
Cow position: chr7:37165490-37165014 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 187

Conread position: 3-465
Cow position: chr7:67491265-67490822 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 39

Conread position: 4-352
Cow position: chr7:24932931-24933287 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 203

Conread position: 4-462
Cow position: chr7:64354644-64354170 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr7:13282-13764 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr7:5260312-5260785 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr7:6626748-6627228 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 92

Conread position: 4-465
Cow position: chr7:7261150-7260669 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr7:10428795-10429274 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr7:11461502-11461983 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr7:13531279-13531756 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr7:20151090-20151567 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 26

Conread position: 4-465
Cow position: chr7:20796831-20797301 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 26

Conread position: 4-465
Cow position: chr7:25442398-25441929 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 26

Conread position: 4-465
Cow position: chr7:26927546-26928027 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr7:27458106-27458589 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 4-465
Cow position: chr7:34151572-34151092 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 0

Conread position: 4-465
Cow position: chr7:34414429-34414908 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 168

Conread position: 4-465
Cow position: chr7:34488542-34488066 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 64

Conread position: 4-465
Cow position: chr7:42225169-42225648 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 204

Conread position: 4-465
Cow position: chr7:46748612-46748135 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 125

Conread position: 4-465
Cow position: chr7:55039852-55040334 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr7:60727830-60728304 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 195

Conread position: 4-465
Cow position: chr7:61577507-61577981 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 204

Conread position: 4-465
Cow position: chr7:65813464-65812984 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-467
Cow position: chr7:537215-537694 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 51

Conread position: 4-467
Cow position: chr7:39132205-39132685 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 27

Conread position: 6-450
Cow position: chr7:58336398-58336861 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 201

Conread position: 6-465
Cow position: chr7:38146097-38146581 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 24

Conread position: 7-465
Cow position: chr7:42302839-42303305 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 23

Conread position: 7-465
Cow position: chr7:58642932-58643402 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 124

Conread position: 7-465
Cow position: chr7:59773938-59773461 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 325

Conread position: 8-370
Cow position: chr7:45953332-45952955 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 271

Conread position: 14-465
Cow position: chr7:8564-8098 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 226

Conread position: 15-465
Cow position: chr7:33403266-33403734 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 17-427
Cow position: chr7:59682022-59681576 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 311
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 31, 13

Conread position: 18-465
Cow position: chr7:54697907-54697468 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 125

Conread position: 23-465
Cow position: chr7:29473062-29472603 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 188

Conread position: 33-465
Cow position: chr7:20062071-20061624 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 196

Conread position: 38-465
Cow position: chr7:20771993-20772436 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 180

Conread position: 45-465
Cow position: chr7:1601363-1601775 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 104

Conread position: 57-467
Cow position: chr7:21878088-21878522 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 284
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 82, 20

Conread position: 60-455
Cow position: chr7:46900019-46900433 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 71-466
Cow position: chr7:51921663-51921273 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 265
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 60, 51

Conread position: 91-456
Cow position: chr7:59140211-59139834 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 7

Conread position: 99-426
Cow position: chr7:20785505-20785175 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 167, 101

Conread position: 127-466
Cow position: chr7:1816110-1816457 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 244
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 54

Conread position: 130-465
Cow position: chr7:950709-950352 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 72

Conread position: 132-465
Cow position: chr7:52764785-52764437 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 57

Conread position: 143-368
Cow position: chr7:28624587-28624352 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 143, 189

Conread position: 144-465
Cow position: chr7:3127827-3127490 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 62

Conread position: 146-419
Cow position: chr7:66572521-66572805 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 93, 60

Conread position: 155-465
Cow position: chr7:67677546-67677219 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 132, 12

Conread position: 159-463
Cow position: chr7:42427319-42426998 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 133, 0

Conread position: 159-501
Cow position: chr7:901647-902008 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 125, 31

Conread position: 200-463
Cow position: chr7:527380-527102 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 88, 189

Conread position: 214-465
Cow position: chr7:18425624-18425885 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 181
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 74, 14

Conread position: 288-463
Cow position: chr7:31866454-31866274 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 141

Show alignments to all cow chromosomes.