Cow genome map

Conread name: Lym2-sn16_A03.f

Conread position: 1-375
Cow position: chr8:11373876-11374252 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 94

Conread position: 1-465
Cow position: chr8:13372716-13372233 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 322

Conread position: 1-465
Cow position: chr8:14926073-14926547 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-465
Cow position: chr8:17313852-17313371 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 206

Conread position: 1-465
Cow position: chr8:23773450-23772971 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 87

Conread position: 1-465
Cow position: chr8:25773824-25774309 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 69

Conread position: 2-368
Cow position: chr8:46216789-46217176 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 47

Conread position: 2-386
Cow position: chr8:27536050-27536437 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 125

Conread position: 2-449
Cow position: chr8:2233928-2234389 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 115

Conread position: 2-465
Cow position: chr8:24869687-24870153 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 39

Conread position: 2-465
Cow position: chr8:44109883-44109430 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 168

Conread position: 3-465
Cow position: chr8:11804619-11804154 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 165

Conread position: 4-363
Cow position: chr8:38044320-38044690 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 204

Conread position: 4-363
Cow position: chr8:38589544-38589906 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 26

Conread position: 4-363
Cow position: chr8:49285250-49285624 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-368
Cow position: chr8:5244603-5244965 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 39

Conread position: 4-368
Cow position: chr8:8553907-8554278 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 26

Conread position: 4-374
Cow position: chr8:21154536-21154914 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 26

Conread position: 4-421
Cow position: chr8:1934876-1935304 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 172

Conread position: 4-447
Cow position: chr8:46801099-46801566 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 214

Conread position: 4-461
Cow position: chr8:26393008-26393490 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 220

Conread position: 4-464
Cow position: chr8:8399305-8399766 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 125

Conread position: 4-465
Cow position: chr8:43231-43710 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 102

Conread position: 4-465
Cow position: chr8:1151472-1151938 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 105

Conread position: 4-465
Cow position: chr8:1501472-1501939 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 40

Conread position: 4-465
Cow position: chr8:3333843-3333361 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 257

Conread position: 4-465
Cow position: chr8:3955850-3955385 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 35

Conread position: 4-465
Cow position: chr8:5019824-5019343 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr8:6465689-6465208 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr8:8913535-8913059 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 183

Conread position: 4-465
Cow position: chr8:11835344-11834864 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 4-465
Cow position: chr8:12446596-12447071 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 142

Conread position: 4-465
Cow position: chr8:12451865-12451379 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 328

Conread position: 4-465
Cow position: chr8:12805587-12805101 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 4-465
Cow position: chr8:14257895-14257418 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 27

Conread position: 4-465
Cow position: chr8:14589063-14589539 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 26

Conread position: 4-465
Cow position: chr8:17382302-17382780 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr8:19333386-19332908 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chr8:21252053-21251571 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 186

Conread position: 4-465
Cow position: chr8:24873773-24874226 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 42

Conread position: 4-465
Cow position: chr8:24913478-24913955 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 4-465
Cow position: chr8:25413431-25412956 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 74

Conread position: 4-465
Cow position: chr8:29922555-29923006 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 72

Conread position: 4-465
Cow position: chr8:30156914-30156438 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 202

Conread position: 4-465
Cow position: chr8:35472109-35471638 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 177

Conread position: 4-465
Cow position: chr8:38393445-38392962 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr8:39193105-39193587 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chr8:42486719-42486244 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 89

Conread position: 4-465
Cow position: chr8:44240880-44241354 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 101

Conread position: 4-465
Cow position: chr8:47888673-47888184 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 200

Conread position: 4-465
Cow position: chr8:49219755-49219272 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 4-465
Cow position: chr8:53837752-53837279 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 171

Conread position: 4-465
Cow position: chr8:55271718-55272193 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 33

Conread position: 4-465
Cow position: chr8:58183825-58184286 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 70

Conread position: 4-465
Cow position: chr8:59260129-59260613 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 183

Conread position: 5-364
Cow position: chr8:41970250-41970618 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 229

Conread position: 5-461
Cow position: chr8:11777465-11776998 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 58

Conread position: 5-463
Cow position: chr8:51701137-51700654 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 100

Conread position: 5-465
Cow position: chr8:4273082-4272604 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 66

Conread position: 5-469
Cow position: chr8:8225806-8226279 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 314
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 12, 39

Conread position: 6-364
Cow position: chr8:27819716-27819350 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 254
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 24, 120

Conread position: 7-465
Cow position: chr8:2167709-2168183 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 227

Conread position: 7-465
Cow position: chr8:4689209-4688740 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 393

Conread position: 7-465
Cow position: chr8:6062664-6063144 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 23

Conread position: 7-465
Cow position: chr8:10751152-10750680 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 200

Conread position: 8-404
Cow position: chr8:45069746-45069334 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 199

Conread position: 8-431
Cow position: chr8:9640703-9640262 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 41

Conread position: 13-465
Cow position: chr8:49414869-49414405 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 22

Conread position: 18-465
Cow position: chr8:46059163-46059618 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 20

Conread position: 20-464
Cow position: chr8:11764750-11764286 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 207

Conread position: 23-465
Cow position: chr8:42153506-42153964 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 115

Conread position: 24-428
Cow position: chr8:5680373-5680781 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 106

Conread position: 25-465
Cow position: chr8:36786004-36786465 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 27-470
Cow position: chr8:11791587-11791146 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 291
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 5, 208

Conread position: 35-465
Cow position: chr8:9738313-9737868 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 151

Conread position: 46-383
Cow position: chr8:51697684-51698020 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 242, 75

Conread position: 49-465
Cow position: chr8:61099512-61099947 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 99

Conread position: 55-465
Cow position: chr8:21041864-21042293 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 0

Conread position: 62-465
Cow position: chr8:40890556-40890961 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 281
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 66

Conread position: 64-465
Cow position: chr8:16733540-16733134 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 283
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 226, 128

Conread position: 69-352
Cow position: chr8:56752148-56751853 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 200
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 36

Conread position: 72-465
Cow position: chr8:43541804-43542218 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 250

Conread position: 74-463
Cow position: chr8:42470418-42470015 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 59, 119

Conread position: 76-465
Cow position: chr8:29009344-29008939 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 77-465
Cow position: chr8:11604971-11604559 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 62

Conread position: 80-465
Cow position: chr8:41642949-41643351 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 284
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 208, 44

Conread position: 87-384
Cow position: chr8:28881402-28881090 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 231
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 76, 111

Conread position: 102-467
Cow position: chr8:11566442-11566066 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 264
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 29, 175

Conread position: 109-463
Cow position: chr8:36810846-36810477 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 97

Conread position: 130-349
Cow position: chr8:45988457-45988228 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 154, 0

Conread position: 130-465
Cow position: chr8:45157855-45158205 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 252
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 107, 232

Conread position: 144-465
Cow position: chr8:10740968-10741308 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 144, 0

Conread position: 145-465
Cow position: chr8:11147597-11147924 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 143, 14

Conread position: 153-465
Cow position: chr8:18291335-18291661 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 227
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 132, 66

Conread position: 153-465
Cow position: chr8:50996451-50996124 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 137, 53

Conread position: 154-465
Cow position: chr8:9943053-9943375 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 54

Conread position: 155-461
Cow position: chr8:13555891-13555587 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 202
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 215, 21

Conread position: 181-420
Cow position: chr8:17995582-17995835 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 193-465
Cow position: chr8:51068690-51068399 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 91, 0

Conread position: 227-465
Cow position: chr8:1346655-1346912 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 0

Show alignments to all cow chromosomes.