Cow genome map
| Conread name: | Lym2-sn16_A03.f |
| Conread position: | 1-465 |
| Cow position: | chr9:18507360-18507842 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 206 |
| Conread position: | 1-470 |
| Cow position: | chr9:51179705-51180194 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 2-460 |
| Cow position: | chr9:40416551-40417039 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 2-463 |
| Cow position: | chr9:2551955-2552432 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 2-464 |
| Cow position: | chr9:27098813-27098325 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 192 |
| Conread position: | 2-464 |
| Cow position: | chr9:33950743-33951212 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 201 |
| Conread position: | 2-465 |
| Cow position: | chr9:12726923-12726442 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 2-465 |
| Cow position: | chr9:35681874-35681396 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 244 |
| Conread position: | 2-465 |
| Cow position: | chr9:35708040-35707562 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 244 |
| Conread position: | 4-363 |
| Cow position: | chr9:34770620-34770259 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 181 |
| Conread position: | 4-464 |
| Cow position: | chr9:28024273-28023793 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 168 |
| Conread position: | 4-464 |
| Cow position: | chr9:31810042-31809569 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr9:202827-203303 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 198 |
| Conread position: | 4-465 |
| Cow position: | chr9:649586-650057 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 4-465 |
| Cow position: | chr9:2806893-2807374 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-465 |
| Cow position: | chr9:5534754-5535234 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 235 |
| Conread position: | 4-465 |
| Cow position: | chr9:10939187-10938715 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr9:14002503-14002046 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 4-465 |
| Cow position: | chr9:16178058-16177578 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 317 |
| Conread position: | 4-465 |
| Cow position: | chr9:17303505-17303981 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 4-465 |
| Cow position: | chr9:19156821-19157297 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 26 |
| Conread position: | 4-465 |
| Cow position: | chr9:21411773-21411296 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 4-465 |
| Cow position: | chr9:22320240-22320714 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr9:27037575-27037094 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 236 |
| Conread position: | 4-465 |
| Cow position: | chr9:42312156-42311678 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 203 |
| Conread position: | 4-465 |
| Cow position: | chr9:43667117-43666660 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 4-465 |
| Cow position: | chr9:45875983-45875503 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 335 |
| Conread position: | 4-465 |
| Cow position: | chr9:47005206-47004724 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 420 |
| Conread position: | 4-467 |
| Cow position: | chr9:2213609-2213129 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 186 |
| Conread position: | 5-368 |
| Cow position: | chr9:28357027-28356652 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 5-462 |
| Cow position: | chr9:59508705-59509180 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 19 |
| Conread position: | 6-469 |
| Cow position: | chr9:25212339-25211855 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 231 |
| Conread position: | 7-465 |
| Cow position: | chr9:3311079-3310608 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 426 |
| Conread position: | 7-465 |
| Cow position: | chr9:6251731-6251245 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 7-465 |
| Cow position: | chr9:9015535-9015056 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 362 |
| Conread position: | 7-465 |
| Cow position: | chr9:47044431-47043953 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 7-481 |
| Cow position: | chr9:38678590-38678102 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 28 |
| Conread position: | 17-468 |
| Cow position: | chr9:59480399-59480858 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 329 |
| Conread position: | 18-465 |
| Cow position: | chr9:31091633-31091167 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 102 |
| Conread position: | 20-465 |
| Cow position: | chr9:13473333-13473799 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 129 |
| Conread position: | 21-465 |
| Cow position: | chr9:37160368-37160828 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 185 |
| Conread position: | 30-384 |
| Cow position: | chr9:20180987-20181346 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 69-465 |
| Cow position: | chr9:49301840-49302247 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 107 |
| Conread position: | 76-383 |
| Cow position: | chr9:33593529-33593208 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 78-462 |
| Cow position: | chr9:23420991-23420602 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 208, 144 |
| Conread position: | 79-465 |
| Cow position: | chr9:35936621-35937029 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 99-463 |
| Cow position: | chr9:22437318-22436940 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 103 |
| Conread position: | 101-364 |
| Cow position: | chr9:44820706-44820427 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 108-468 |
| Cow position: | chr9:59538463-59538084 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 109-465 |
| Cow position: | chr9:128833-129207 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 114-465 |
| Cow position: | chr9:18833974-18834342 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 138-465 |
| Cow position: | chr9:5198976-5199317 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 49, 30 |
| Conread position: | 144-375 |
| Cow position: | chr9:1999520-1999759 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 156-465 |
| Cow position: | chr9:6978631-6978314 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 14, 122 |
| Conread position: | 168-465 |
| Cow position: | chr9:45898052-45897737 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 169-465 |
| Cow position: | chr9:1994112-1994421 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 119, 37 |
| Conread position: | 184-470 |
| Cow position: | chr9:10109663-10109362 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 109, 54 |
| Conread position: | 198-465 |
| Cow position: | chr9:2607912-2607626 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 213-463 |
| Cow position: | chr9:3961372-3961636 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 224-465 |
| Cow position: | chr9:50792966-50792706 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 228-465 |
| Cow position: | chr9:22406814-22407061 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 234-465 |
| Cow position: | chr9:6300820-6300569 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.