Cow genome map

Conread name: Lym2-sn16_A03.f

Conread position: 1-383
Cow position: chrX:17890918-17890526 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 29

Conread position: 1-425
Cow position: chrX:21388959-21388518 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 150

Conread position: 1-465
Cow position: chrX:2480253-2480735 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 149

Conread position: 1-465
Cow position: chrX:23279402-23278921 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 206

Conread position: 1-465
Cow position: chrX:30167700-30168180 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 206

Conread position: 1-465
Cow position: chrX:39561557-39562040 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 153

Conread position: 2-368
Cow position: chrX:302476-302096 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 144, 8

Conread position: 2-368
Cow position: chrX:387512-387135 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 264
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 33, 153

Conread position: 2-368
Cow position: chrX:24807179-24807552 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 257
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 282, 52

Conread position: 2-383
Cow position: chrX:22126400-22126787 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 99

Conread position: 2-389
Cow position: chrX:3143212-3142821 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 261

Conread position: 2-437
Cow position: chrX:26623429-26623887 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 197

Conread position: 2-461
Cow position: chrX:34008159-34007683 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 233

Conread position: 2-465
Cow position: chrX:20133779-20134253 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 19

Conread position: 2-465
Cow position: chrX:20732623-20732143 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 149

Conread position: 2-465
Cow position: chrX:21317843-21317378 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 116

Conread position: 2-465
Cow position: chrX:27645435-27644971 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 310
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 129

Conread position: 2-465
Cow position: chrX:36839095-36838609 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 165

Conread position: 3-467
Cow position: chrX:5668370-5668819 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 330
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 290, 44

Conread position: 4-375
Cow position: chrX:15040171-15040554 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 353

Conread position: 4-460
Cow position: chrX:2047458-2046992 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 26

Conread position: 4-461
Cow position: chrX:32328586-32328110 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 198

Conread position: 4-463
Cow position: chrX:5360381-5359905 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-463
Cow position: chrX:23388176-23388652 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 32

Conread position: 4-463
Cow position: chrX:31727848-31727369 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 219

Conread position: 4-464
Cow position: chrX:2273674-2273204 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 84

Conread position: 4-464
Cow position: chrX:18221787-18221316 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 26

Conread position: 4-464
Cow position: chrX:38149971-38149490 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 423

Conread position: 4-465
Cow position: chrX:1549353-1548874 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 204

Conread position: 4-465
Cow position: chrX:2814105-2814586 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chrX:3082766-3083240 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 20

Conread position: 4-465
Cow position: chrX:3360196-3359722 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 34

Conread position: 4-465
Cow position: chrX:3418846-3419327 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 258

Conread position: 4-465
Cow position: chrX:7095871-7095388 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 203

Conread position: 4-465
Cow position: chrX:8481823-8481346 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 103

Conread position: 4-465
Cow position: chrX:9095018-9094540 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 203

Conread position: 4-465
Cow position: chrX:9127457-9126976 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chrX:10529415-10529893 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chrX:11146967-11147436 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chrX:13929362-13929836 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 26

Conread position: 4-465
Cow position: chrX:15177062-15177538 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 189

Conread position: 4-465
Cow position: chrX:15261245-15261718 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chrX:15978580-15979052 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 316

Conread position: 4-465
Cow position: chrX:18657433-18657910 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 26

Conread position: 4-465
Cow position: chrX:19398148-19397668 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chrX:19474777-19475260 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 45

Conread position: 4-465
Cow position: chrX:20034034-20034508 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 197

Conread position: 4-465
Cow position: chrX:22818446-22817968 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 26

Conread position: 4-465
Cow position: chrX:24412401-24411925 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 204

Conread position: 4-465
Cow position: chrX:24770483-24770962 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chrX:26443919-26443446 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 26

Conread position: 4-465
Cow position: chrX:29094943-29095428 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chrX:29098798-29098327 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 41

Conread position: 4-465
Cow position: chrX:30013367-30012903 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-465
Cow position: chrX:30229740-30230216 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 105

Conread position: 4-465
Cow position: chrX:31495108-31494625 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chrX:34093455-34093936 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 4-465
Cow position: chrX:35532231-35531753 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 203

Conread position: 4-467
Cow position: chrX:9010705-9010232 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 103

Conread position: 4-470
Cow position: chrX:30137483-30137966 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 272

Conread position: 4-477
Cow position: chrX:31200929-31200442 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 37

Conread position: 4-499
Cow position: chrX:16781657-16781143 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 161

Conread position: 5-465
Cow position: chrX:5649863-5650333 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 83

Conread position: 5-465
Cow position: chrX:17665425-17665905 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 357

Conread position: 5-465
Cow position: chrX:30072253-30071791 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 309
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 203, 14

Conread position: 7-368
Cow position: chrX:23453683-23454054 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 232

Conread position: 7-460
Cow position: chrX:28520232-28520700 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 23

Conread position: 7-465
Cow position: chrX:2578790-2578317 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 28

Conread position: 7-465
Cow position: chrX:16809515-16809993 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 7-465
Cow position: chrX:21831884-21831405 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 7-465
Cow position: chrX:22810264-22809789 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 200

Conread position: 8-486
Cow position: chrX:15143833-15144327 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 141

Conread position: 9-389
Cow position: chrX:43790779-43791178 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 14-464
Cow position: chrX:42382015-42382462 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 317
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 275, 99

Conread position: 17-465
Cow position: chrX:29909067-29909528 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 136

Conread position: 18-464
Cow position: chrX:17524388-17524828 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 294
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 333, 147

Conread position: 20-348
Cow position: chrX:503665-504016 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 57, 0

Conread position: 26-465
Cow position: chrX:27978468-27978922 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 180

Conread position: 41-364
Cow position: chrX:12312644-12312982 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 233

Conread position: 48-465
Cow position: chrX:8513610-8513188 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 91

Conread position: 51-465
Cow position: chrX:29948294-29948720 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 101

Conread position: 68-465
Cow position: chrX:26397811-26398228 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 256
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 214, 0

Conread position: 71-363
Cow position: chrX:40642491-40642203 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 9

Conread position: 108-390
Cow position: chrX:41848947-41849233 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 29, 53

Conread position: 109-465
Cow position: chrX:672936-673309 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 258
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 130, 97

Conread position: 113-465
Cow position: chrX:31511875-31511502 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 219

Conread position: 119-464
Cow position: chrX:28505004-28505371 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 256
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 169, 213

Conread position: 120-466
Cow position: chrX:14783222-14783584 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 86

Conread position: 131-465
Cow position: chrX:28559627-28559979 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 131-486
Cow position: chrX:3373674-3374047 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 360

Conread position: 132-465
Cow position: chrX:15622247-15622599 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 158-465
Cow position: chrX:39565102-39565410 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 66

Conread position: 159-465
Cow position: chrX:3466424-3466749 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 129, 269

Conread position: 159-481
Cow position: chrX:28607876-28608216 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 234
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 129, 301

Conread position: 168-386
Cow position: chrX:34220708-34220482 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 120, 34

Conread position: 203-465
Cow position: chrX:21581664-21581384 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 85, 274

Conread position: 225-465
Cow position: chrX:13432186-13432444 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 63, 14

Conread position: 234-465
Cow position: chrX:18536537-18536296 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 54, 42

Conread position: 294-465
Cow position: chrX:28550593-28550413 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.