Cow genome map
| Conread name: | Lym2-sn24_C10.f |
| Conread position: | 26-604 |
| Cow position: | chr1:22496159-22495568 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 28-577 |
| Cow position: | chr1:82572634-82573195 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 155 |
| Conread position: | 33-487 |
| Cow position: | chr1:31232749-31233215 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 34-289 |
| Cow position: | chr1:45979245-45978976 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 113 |
| Conread position: | 39-429 |
| Cow position: | chr1:25885504-25885912 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 293 |
| Conread position: | 39-603 |
| Cow position: | chr1:87914394-87914938 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 383 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 40-193 |
| Cow position: | chr1:28407925-28408077 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 114, 79 |
| Conread position: | 40-349 |
| Cow position: | chr1:88017234-88017565 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 143 |
| Conread position: | 40-430 |
| Cow position: | chr1:14559956-14560344 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 40-604 |
| Cow position: | chr1:34893172-34892581 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 371 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 20, 147 |
| Conread position: | 41-188 |
| Cow position: | chr1:72117196-72117342 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 14, 44 |
| Conread position: | 41-412 |
| Cow position: | chr1:6985254-6985637 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 41-603 |
| Cow position: | chr1:18223280-18223845 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 143 |
| Conread position: | 41-604 |
| Cow position: | chr1:11878588-11879145 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 42-196 |
| Cow position: | chr1:71272612-71272458 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 82, 70 |
| Conread position: | 42-198 |
| Cow position: | chr1:3746696-3746533 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 42-346 |
| Cow position: | chr1:47371535-47371225 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 15, 111 |
| Conread position: | 42-604 |
| Cow position: | chr1:64098685-64099255 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 208 |
| Conread position: | 43-409 |
| Cow position: | chr1:61242310-61241928 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 76, 139 |
| Conread position: | 44-302 |
| Cow position: | chr1:18016746-18016482 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 45-409 |
| Cow position: | chr1:6984467-6984835 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 275 |
| Conread position: | 50-351 |
| Cow position: | chr1:65155188-65155516 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 9, 134 |
| Conread position: | 58-198 |
| Cow position: | chr1:77755135-77755283 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 125 |
| Conread position: | 58-414 |
| Cow position: | chr1:6322473-6322120 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 60-412 |
| Cow position: | chr1:22774086-22774440 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 58, 76 |
| Conread position: | 61-604 |
| Cow position: | chr1:64479391-64479952 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 179 |
| Conread position: | 67-411 |
| Cow position: | chr1:41092602-41092974 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 21, 269 |
| Conread position: | 76-285 |
| Cow position: | chr1:57757741-57757518 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 92-604 |
| Cow position: | chr1:74713997-74713481 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 200-495 |
| Cow position: | chr1:85642-85349 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 131, 95 |
| Conread position: | 200-557 |
| Cow position: | chr1:40420050-40420386 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 127, 46 |
| Conread position: | 201-397 |
| Cow position: | chr1:69203862-69204063 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 128, 109 |
| Conread position: | 201-410 |
| Cow position: | chr1:3020372-3020576 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 128, 104 |
| Conread position: | 201-603 |
| Cow position: | chr1:30042138-30041760 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 66 |
| Conread position: | 201-604 |
| Cow position: | chr1:40164644-40164262 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 236, 65 |
| Conread position: | 201-604 |
| Cow position: | chr1:49728287-49727900 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 203-412 |
| Cow position: | chr1:23887364-23887166 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 48 |
| Conread position: | 203-604 |
| Cow position: | chr1:85409461-85409846 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 107 |
| Conread position: | 215-579 |
| Cow position: | chr1:102556980-102556637 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 176, 47 |
| Conread position: | 215-603 |
| Cow position: | chr1:71555414-71555764 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 239-604 |
| Cow position: | chr1:39244189-39244556 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 71 |
| Conread position: | 241-563 |
| Cow position: | chr1:11831650-11831342 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 5, 18 |
| Conread position: | 247-408 |
| Cow position: | chr1:80329677-80329833 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 82, 64 |
| Conread position: | 261-604 |
| Cow position: | chr1:92550790-92551122 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 274-604 |
| Cow position: | chr1:52207027-52206702 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 281-577 |
| Cow position: | chr1:63133968-63133675 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 286-572 |
| Cow position: | chr1:69061563-69061292 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 314-537 |
| Cow position: | chr1:45978219-45977993 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 328-594 |
| Cow position: | chr1:19439726-19439991 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 113, 34 |
| Conread position: | 342-604 |
| Cow position: | chr1:40222759-40223014 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 354-604 |
| Cow position: | chr1:22516816-22516567 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 86, 15 |
| Conread position: | 360-604 |
| Cow position: | chr1:54162536-54162782 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 362-577 |
| Cow position: | chr1:22070522-22070307 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 74, 143 |
| Conread position: | 365-596 |
| Cow position: | chr1:81371430-81371660 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 71, 168 |
| Conread position: | 365-604 |
| Cow position: | chr1:23624422-23624185 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 386-604 |
| Cow position: | chr1:42174340-42174566 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 389-604 |
| Cow position: | chr1:40161456-40161236 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 396-592 |
| Cow position: | chr1:57646897-57646703 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 396-604 |
| Cow position: | chr1:52819526-52819320 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 40, 81 |
| Conread position: | 400-596 |
| Cow position: | chr1:72182029-72181835 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 416-604 |
| Cow position: | chr1:1825990-1825804 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 416-604 |
| Cow position: | chr1:82865442-82865256 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 94 |
Show alignments to all cow chromosomes.