Cow genome map
| Conread name: | Lym2-sn24_C10.f |
| Conread position: | 37-428 |
| Cow position: | chr11:18452568-18452969 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 39-165 |
| Cow position: | chr11:53270527-53270652 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 39-197 |
| Cow position: | chr11:1774301-1774470 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 39-198 |
| Cow position: | chr11:16363808-16363978 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 39-289 |
| Cow position: | chr11:87168202-87168462 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 39-604 |
| Cow position: | chr11:18153669-18154255 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 40-196 |
| Cow position: | chr11:30660875-30660708 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 40-198 |
| Cow position: | chr11:21909550-21909719 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 40-317 |
| Cow position: | chr11:38009435-38009713 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 145 |
| Conread position: | 40-414 |
| Cow position: | chr11:17737897-17737504 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 17, 292 |
| Conread position: | 40-489 |
| Cow position: | chr11:57752795-57753280 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 335 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 19, 284 |
| Conread position: | 40-604 |
| Cow position: | chr11:55120050-55119480 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 242 |
| Conread position: | 41-520 |
| Cow position: | chr11:77762939-77763426 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 358 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 41-555 |
| Cow position: | chr11:34025114-34024608 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 41-604 |
| Cow position: | chr11:77772119-77772690 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 40 |
| Conread position: | 42-529 |
| Cow position: | chr11:22851620-22851104 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 42-562 |
| Cow position: | chr11:25807155-25807704 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 143 |
| Conread position: | 42-604 |
| Cow position: | chr11:5220855-5221435 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 42-604 |
| Cow position: | chr11:25972364-25972916 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 48-198 |
| Cow position: | chr11:34398055-34397895 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 55-412 |
| Cow position: | chr11:21544602-21544240 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 71, 188 |
| Conread position: | 58-414 |
| Cow position: | chr11:2813404-2813042 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 109 |
| Conread position: | 58-414 |
| Cow position: | chr11:29014633-29014271 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 58-604 |
| Cow position: | chr11:69491972-69491415 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 64-292 |
| Cow position: | chr11:77477719-77477952 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 64-292 |
| Cow position: | chr11:77478393-77478626 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 69-513 |
| Cow position: | chr11:34304017-34303548 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 351 |
| Conread position: | 71-604 |
| Cow position: | chr11:10877802-10877249 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 264 |
| Conread position: | 77-417 |
| Cow position: | chr11:58793463-58793815 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 81-423 |
| Cow position: | chr11:8087623-8087976 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 263 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 38, 206 |
| Conread position: | 91-604 |
| Cow position: | chr11:39830702-39831226 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 192 |
| Conread position: | 119-502 |
| Cow position: | chr11:77819787-77820171 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 119-604 |
| Cow position: | chr11:57062359-57061873 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 155-604 |
| Cow position: | chr11:52859912-52859454 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 20 |
| Conread position: | 189-604 |
| Cow position: | chr11:35251581-35251996 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 12 |
| Conread position: | 192-603 |
| Cow position: | chr11:24008499-24008078 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 138, 74 |
| Conread position: | 195-596 |
| Cow position: | chr11:25856593-25856191 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 197-498 |
| Cow position: | chr11:57153265-57153563 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 200-532 |
| Cow position: | chr11:82529255-82528940 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 200-538 |
| Cow position: | chr11:21893087-21893409 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 201-513 |
| Cow position: | chr11:34761338-34761630 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 235, 20 |
| Conread position: | 201-604 |
| Cow position: | chr11:43831413-43831798 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 192, 25 |
| Conread position: | 201-604 |
| Cow position: | chr11:77756368-77756764 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 45 |
| Conread position: | 202-313 |
| Cow position: | chr11:1774495-1774611 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 202-604 |
| Cow position: | chr11:51177870-51177489 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 84 |
| Conread position: | 213-604 |
| Cow position: | chr11:9424298-9423910 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 92 |
| Conread position: | 239-522 |
| Cow position: | chr11:34265757-34265484 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 113, 158 |
| Conread position: | 284-562 |
| Cow position: | chr11:60822417-60822693 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 315-491 |
| Cow position: | chr11:35284127-35283943 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 316-604 |
| Cow position: | chr11:1774748-1775040 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 333-588 |
| Cow position: | chr11:7131215-7130956 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 201 |
| Conread position: | 379-604 |
| Cow position: | chr11:12791017-12790799 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 381-556 |
| Cow position: | chr11:56962428-56962612 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 408-604 |
| Cow position: | chr11:23738592-23738789 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 26, 184 |
| Conread position: | 416-596 |
| Cow position: | chr11:17192092-17192273 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 143 |
| Conread position: | 424-598 |
| Cow position: | chr11:33103475-33103651 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
Show alignments to all cow chromosomes.