Cow genome map
| Conread name: | Lym2-sn24_C10.f |
| Conread position: | 22-394 |
| Cow position: | chr3:74846135-74846533 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 38-355 |
| Cow position: | chr3:12531544-12531882 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 15, 281 |
| Conread position: | 39-394 |
| Cow position: | chr3:60947625-60947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 146 |
| Conread position: | 40-185 |
| Cow position: | chr3:31528394-31528245 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 40-278 |
| Cow position: | chr3:73154519-73154261 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 19, 138 |
| Conread position: | 40-311 |
| Cow position: | chr3:45642061-45641778 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 40-356 |
| Cow position: | chr3:41860791-41861106 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 40-375 |
| Cow position: | chr3:54328789-54329134 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 40-427 |
| Cow position: | chr3:17519226-17519635 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 40-587 |
| Cow position: | chr3:56042157-56042713 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 107 |
| Conread position: | 40-604 |
| Cow position: | chr3:8754026-8753452 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 145 |
| Conread position: | 41-193 |
| Cow position: | chr3:1549881-1549724 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 135 |
| Conread position: | 41-266 |
| Cow position: | chr3:77589954-77589710 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 41-274 |
| Cow position: | chr3:43004232-43004497 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 133 |
| Conread position: | 41-307 |
| Cow position: | chr3:36514792-36515070 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 41-411 |
| Cow position: | chr3:49414181-49414550 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 41-592 |
| Cow position: | chr3:32773763-32773215 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 135 |
| Conread position: | 43-193 |
| Cow position: | chr3:26581502-26581664 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 141 |
| Conread position: | 43-331 |
| Cow position: | chr3:68127655-68127353 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 16, 285 |
| Conread position: | 44-197 |
| Cow position: | chr3:74723871-74724035 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 15, 140 |
| Conread position: | 45-313 |
| Cow position: | chr3:2285252-2284958 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 47-430 |
| Cow position: | chr3:23274407-23274814 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 290 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 48-604 |
| Cow position: | chr3:27633441-27634019 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 135 |
| Conread position: | 52-406 |
| Cow position: | chr3:79315733-79315363 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 58-197 |
| Cow position: | chr3:5317211-5317358 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 61, 123 |
| Conread position: | 58-197 |
| Cow position: | chr3:69147992-69148135 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 121 |
| Conread position: | 58-412 |
| Cow position: | chr3:13478750-13478401 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 97, 57 |
| Conread position: | 58-434 |
| Cow position: | chr3:43966871-43967263 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 59-347 |
| Cow position: | chr3:15091415-15091128 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 60, 118 |
| Conread position: | 62-401 |
| Cow position: | chr3:73827301-73826957 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 257 |
| Conread position: | 69-604 |
| Cow position: | chr3:3690166-3690731 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 382 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 86, 34 |
| Conread position: | 77-313 |
| Cow position: | chr3:4615596-4615351 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 125 |
| Conread position: | 108-410 |
| Cow position: | chr3:5084637-5084961 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 115-488 |
| Cow position: | chr3:85086336-85085963 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 63 |
| Conread position: | 154-604 |
| Cow position: | chr3:77157756-77157321 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 309 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 195-350 |
| Cow position: | chr3:56164153-56163999 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 116 |
| Conread position: | 195-604 |
| Cow position: | chr3:77468341-77467931 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 197-480 |
| Cow position: | chr3:8275831-8275553 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 197-604 |
| Cow position: | chr3:60854459-60854859 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 85 |
| Conread position: | 200-488 |
| Cow position: | chr3:78545487-78545776 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 27, 81 |
| Conread position: | 200-489 |
| Cow position: | chr3:26581693-26581964 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 129, 54 |
| Conread position: | 201-409 |
| Cow position: | chr3:47497900-47497709 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 201-573 |
| Cow position: | chr3:1549692-1549302 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 80, 128 |
| Conread position: | 201-604 |
| Cow position: | chr3:23478610-23478219 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 10 |
| Conread position: | 201-604 |
| Cow position: | chr3:24532199-24531817 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 201-604 |
| Cow position: | chr3:55460115-55460504 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 65 |
| Conread position: | 204-406 |
| Cow position: | chr3:16056361-16056554 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 123, 45 |
| Conread position: | 204-604 |
| Cow position: | chr3:84153684-84153310 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 129, 22 |
| Conread position: | 223-604 |
| Cow position: | chr3:56711273-56711647 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 227-603 |
| Cow position: | chr3:36538566-36538945 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 77 |
| Conread position: | 231-406 |
| Cow position: | chr3:31286774-31286938 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 58 |
| Conread position: | 314-604 |
| Cow position: | chr3:80928653-80928949 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 339-604 |
| Cow position: | chr3:45735404-45735131 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 73, 132 |
| Conread position: | 358-604 |
| Cow position: | chr3:16115813-16115573 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 83, 29 |
| Conread position: | 359-604 |
| Cow position: | chr3:19689410-19689653 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 368-557 |
| Cow position: | chr3:24356972-24356788 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 380-604 |
| Cow position: | chr3:74848836-74849059 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 395-602 |
| Cow position: | chr3:42489098-42489307 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 395-604 |
| Cow position: | chr3:42594449-42594660 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 403-603 |
| Cow position: | chr3:27347137-27347335 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 419-597 |
| Cow position: | chr3:32839774-32839949 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.