Cow genome map

Conread name: Lym2-sn24_C10.f

Conread position: 10-354
Cow position: chr5:67463864-67463497 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 16, 304

Conread position: 25-198
Cow position: chr5:31551461-31551283 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 13

Conread position: 35-197
Cow position: chr5:5830571-5830736 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 87

Conread position: 38-276
Cow position: chr5:12581313-12581064 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 22, 37

Conread position: 40-191
Cow position: chr5:33516154-33516316 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 19, 143

Conread position: 40-313
Cow position: chr5:28370796-28371078 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 44

Conread position: 40-412
Cow position: chr5:6149430-6149800 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 255
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 19, 43

Conread position: 40-602
Cow position: chr5:37048661-37048095 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 85

Conread position: 41-193
Cow position: chr5:37624693-37624531 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 20, 142

Conread position: 41-198
Cow position: chr5:12602510-12602344 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 18, 148

Conread position: 42-596
Cow position: chr5:26098072-26098636 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 367
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 17, 35

Conread position: 42-600
Cow position: chr5:23235077-23234513 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 63

Conread position: 42-603
Cow position: chr5:29431053-29431594 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 378
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 49

Conread position: 43-487
Cow position: chr5:10455953-10455515 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 103

Conread position: 43-604
Cow position: chr5:1304612-1305192 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 397
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 16, 110

Conread position: 54-463
Cow position: chr5:28770856-28770435 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 294
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 70, 125

Conread position: 58-352
Cow position: chr5:35749134-35748823 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 212
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 66, 271

Conread position: 60-313
Cow position: chr5:58842697-58842426 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 65-413
Cow position: chr5:63621138-63620781 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 51, 115

Conread position: 78-412
Cow position: chr5:57964739-57965069 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 77

Conread position: 83-432
Cow position: chr5:25925325-25925668 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 52

Conread position: 87-473
Cow position: chr5:13575182-13575600 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 293
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 32, 176

Conread position: 91-604
Cow position: chr5:45911740-45912256 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 175

Conread position: 100-573
Cow position: chr5:57128002-57127517 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 15

Conread position: 199-567
Cow position: chr5:76122490-76122842 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 243
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 297, 115

Conread position: 201-409
Cow position: chr5:53599626-53599825 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 128, 39

Conread position: 201-425
Cow position: chr5:56109730-56109943 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 126, 96

Conread position: 201-604
Cow position: chr5:21145801-21146188 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 20

Conread position: 201-604
Cow position: chr5:60968862-60968450 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 28

Conread position: 202-410
Cow position: chr5:51953302-51953099 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 127, 108

Conread position: 202-464
Cow position: chr5:62580232-62579979 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 127, 56

Conread position: 204-423
Cow position: chr5:38274201-38273985 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 32, 15

Conread position: 216-558
Cow position: chr5:9232959-9233295 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 243
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 65, 50

Conread position: 219-414
Cow position: chr5:38911483-38911292 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 75

Conread position: 223-604
Cow position: chr5:15882046-15882423 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 75

Conread position: 238-604
Cow position: chr5:51076233-51076602 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 72

Conread position: 260-414
Cow position: chr5:73051500-73051345 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 98

Conread position: 270-489
Cow position: chr5:50156215-50156434 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 5, 47

Conread position: 271-584
Cow position: chr5:27493072-27492757 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 87, 15

Conread position: 271-602
Cow position: chr5:54157065-54156744 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 232
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 35

Conread position: 283-532
Cow position: chr5:21166699-21166946 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 46, 30

Conread position: 314-604
Cow position: chr5:10785894-10786195 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 15, 40

Conread position: 315-550
Cow position: chr5:31550947-31550711 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 45

Conread position: 356-503
Cow position: chr5:60725328-60725177 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 358-498
Cow position: chr5:34168451-34168310 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 78, 50

Conread position: 369-604
Cow position: chr5:34483251-34483491 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 41, 106

Conread position: 383-604
Cow position: chr5:25927438-25927654 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 173
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 57, 11

Conread position: 400-596
Cow position: chr5:23752972-23753168 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 146

Conread position: 411-604
Cow position: chr5:70128374-70128183 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 52

Conread position: 416-604
Cow position: chr5:364362-364551 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 82

Conread position: 418-602
Cow position: chr5:48224352-48224538 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 18, 0

Show alignments to all cow chromosomes.