Cow genome map
| Conread name: | Lym2-sn24_C10.f |
| Conread position: | 21-487 |
| Cow position: | chr9:2638908-2638418 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 344 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 34-604 |
| Cow position: | chr9:51269336-51269882 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 91 |
| Conread position: | 38-411 |
| Cow position: | chr9:35224388-35224768 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 268 |
| Conread position: | 40-197 |
| Cow position: | chr9:22376690-22376855 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 40-274 |
| Cow position: | chr9:35794860-35795101 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 146 |
| Conread position: | 40-604 |
| Cow position: | chr9:14731770-14732350 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 360 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 41-193 |
| Cow position: | chr9:13071793-13071951 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 41-196 |
| Cow position: | chr9:34763427-34763261 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 145 |
| Conread position: | 41-604 |
| Cow position: | chr9:18570956-18570372 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 296 |
| Conread position: | 42-193 |
| Cow position: | chr9:39994331-39994169 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 142 |
| Conread position: | 42-349 |
| Cow position: | chr9:37301775-37302072 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 42-415 |
| Cow position: | chr9:1527369-1526971 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 114 |
| Conread position: | 42-602 |
| Cow position: | chr9:6109341-6109899 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 43-604 |
| Cow position: | chr9:4834419-4835002 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 141 |
| Conread position: | 45-380 |
| Cow position: | chr9:34674508-34674837 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 107, 130 |
| Conread position: | 47-603 |
| Cow position: | chr9:12199470-12198884 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 58-402 |
| Cow position: | chr9:5607462-5607796 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 59-414 |
| Cow position: | chr9:32689026-32688671 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 268 |
| Conread position: | 67-511 |
| Cow position: | chr9:7670083-7670541 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 72 |
| Conread position: | 189-478 |
| Cow position: | chr9:53597200-53596913 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 21, 121 |
| Conread position: | 195-359 |
| Cow position: | chr9:46658033-46657871 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 124 |
| Conread position: | 195-535 |
| Cow position: | chr9:9077494-9077161 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 26 |
| Conread position: | 200-510 |
| Cow position: | chr9:52725738-52725428 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 14 |
| Conread position: | 200-601 |
| Cow position: | chr9:41318366-41317963 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 130, 116 |
| Conread position: | 201-347 |
| Cow position: | chr9:40859066-40858922 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 128, 115 |
| Conread position: | 201-476 |
| Cow position: | chr9:35527331-35527601 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 45 |
| Conread position: | 201-596 |
| Cow position: | chr9:5622401-5622018 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 129, 60 |
| Conread position: | 201-597 |
| Cow position: | chr9:1281489-1281093 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 201-604 |
| Cow position: | chr9:34763235-34762838 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 111 |
| Conread position: | 202-406 |
| Cow position: | chr9:39001386-39001580 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 127, 19 |
| Conread position: | 204-604 |
| Cow position: | chr9:12183346-12183760 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 77 |
| Conread position: | 219-434 |
| Cow position: | chr9:4985730-4985516 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 65 |
| Conread position: | 226-525 |
| Cow position: | chr9:39993971-39993677 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 103, 83 |
| Conread position: | 234-415 |
| Cow position: | chr9:19080576-19080399 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 77 |
| Conread position: | 234-601 |
| Cow position: | chr9:44944451-44944095 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 81 |
| Conread position: | 265-410 |
| Cow position: | chr9:4915151-4915012 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 281-604 |
| Cow position: | chr9:55364584-55364908 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 355-597 |
| Cow position: | chr9:10761577-10761340 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 362-604 |
| Cow position: | chr9:59114143-59114391 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 202 |
| Conread position: | 374-604 |
| Cow position: | chr9:25502747-25502518 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 40, 62 |
| Conread position: | 377-604 |
| Cow position: | chr9:55650820-55651049 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 415-604 |
| Cow position: | chr9:22977032-22976845 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 26, 41 |
Show alignments to all cow chromosomes.