Cow genome map
| Conread name: | Lym2-sn24_C10.f |
| Conread position: | 31-438 |
| Cow position: | chrX:19127008-19127430 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 37-410 |
| Cow position: | chrX:10462931-10462552 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 284 |
| Conread position: | 37-596 |
| Cow position: | chrX:2147935-2147396 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 140 |
| Conread position: | 38-601 |
| Cow position: | chrX:16817269-16816720 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 39-498 |
| Cow position: | chrX:4590575-4590102 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 146 |
| Conread position: | 40-197 |
| Cow position: | chrX:6672405-6672240 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 40-342 |
| Cow position: | chrX:25653711-25653413 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 145 |
| Conread position: | 40-604 |
| Cow position: | chrX:21816891-21816310 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 41-200 |
| Cow position: | chrX:18518661-18518492 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 143 |
| Conread position: | 41-410 |
| Cow position: | chrX:20715623-20715999 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 135 |
| Conread position: | 41-420 |
| Cow position: | chrX:6472335-6471930 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 41-425 |
| Cow position: | chrX:37981008-37980601 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 18, 141 |
| Conread position: | 41-604 |
| Cow position: | chrX:20505330-20504760 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 42-179 |
| Cow position: | chrX:502939-503087 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 140 |
| Conread position: | 42-185 |
| Cow position: | chrX:19391650-19391803 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 141 |
| Conread position: | 42-393 |
| Cow position: | chrX:17516818-17516474 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 191 |
| Conread position: | 42-409 |
| Cow position: | chrX:18699735-18700126 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 16, 301 |
| Conread position: | 42-525 |
| Cow position: | chrX:25106824-25106333 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 251 |
| Conread position: | 42-604 |
| Cow position: | chrX:24201781-24201225 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 44-190 |
| Cow position: | chrX:24286678-24286525 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 135 |
| Conread position: | 44-361 |
| Cow position: | chrX:37236624-37236296 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 14, 137 |
| Conread position: | 44-603 |
| Cow position: | chrX:25453794-25453229 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 213 |
| Conread position: | 58-197 |
| Cow position: | chrX:1427879-1427733 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 58-356 |
| Cow position: | chrX:4630771-4631088 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 61-604 |
| Cow position: | chrX:23253615-23254161 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 67-604 |
| Cow position: | chrX:11675668-11675109 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 254 |
| Conread position: | 68-330 |
| Cow position: | chrX:1330203-1330485 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 261 |
| Conread position: | 76-410 |
| Cow position: | chrX:25921216-25921549 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 79-574 |
| Cow position: | chrX:957073-956555 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 103 |
| Conread position: | 191-598 |
| Cow position: | chrX:41660599-41660228 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 193-407 |
| Cow position: | chrX:32546343-32546129 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 12, 125 |
| Conread position: | 200-423 |
| Cow position: | chrX:37137838-37138055 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 203, 8 |
| Conread position: | 200-485 |
| Cow position: | chrX:28939225-28938956 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 127, 37 |
| Conread position: | 201-403 |
| Cow position: | chrX:18467899-18467697 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 201-408 |
| Cow position: | chrX:4625344-4625141 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 126, 109 |
| Conread position: | 201-411 |
| Cow position: | chrX:37364856-37364650 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 201-486 |
| Cow position: | chrX:40353744-40353471 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 201-571 |
| Cow position: | chrX:43647321-43647686 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 201-592 |
| Cow position: | chrX:19017806-19018203 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 109 |
| Conread position: | 201-597 |
| Cow position: | chrX:2186689-2186311 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 18 |
| Conread position: | 201-604 |
| Cow position: | chrX:12688643-12689042 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 18 |
| Conread position: | 202-604 |
| Cow position: | chrX:4597281-4597681 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 108 |
| Conread position: | 203-597 |
| Cow position: | chrX:21885674-21886065 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 77 |
| Conread position: | 203-604 |
| Cow position: | chrX:18814603-18814216 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 111 |
| Conread position: | 208-600 |
| Cow position: | chrX:10312169-10311795 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 102 |
| Conread position: | 210-415 |
| Cow position: | chrX:27458304-27458493 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 119, 100 |
| Conread position: | 213-604 |
| Cow position: | chrX:8558033-8558418 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 106 |
| Conread position: | 215-548 |
| Cow position: | chrX:31817098-31816791 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 226, 38 |
| Conread position: | 235-488 |
| Cow position: | chrX:9051025-9051275 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 71 |
| Conread position: | 240-541 |
| Cow position: | chrX:3404745-3405039 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 247-510 |
| Cow position: | chrX:18518197-18517924 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 311-604 |
| Cow position: | chrX:24286295-24286001 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 369-604 |
| Cow position: | chrX:4631390-4631627 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 43, 76 |
Show alignments to all cow chromosomes.