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Cow genome map

           
Conread name:
           
Lym2-sn37_F04.f
        

               
Conread position:
               
94-323
               

               
Cow position:
               
chr3:55984215-55983988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
183, 19
               

               
Conread position:
               
102-373
               

               
Cow position:
               
chr3:74243105-74242835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
102-442
               

               
Cow position:
               
chr3:15506562-15506220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 94
               

               
Conread position:
               
102-582
               

               
Cow position:
               
chr3:57760607-57760116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
106-506
               

               
Cow position:
               
chr3:3738590-3738200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 93
               

               
Conread position:
               
108-262
               

               
Cow position:
               
chr3:75107880-75107726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
112-235
               

               
Cow position:
               
chr3:73589667-73589792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
112-238
               

               
Cow position:
               
chr3:19788726-19788854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
112-273
               

               
Cow position:
               
chr3:52845658-52845501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
112-297
               

               
Cow position:
               
chr3:76269993-76269816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
112-298
               

               
Cow position:
               
chr3:3478153-3478338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
48, 88
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr3:10591405-10591603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 8
               

               
Conread position:
               
112-340
               

               
Cow position:
               
chr3:17058446-17058668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 8
               

               
Conread position:
               
112-344
               

               
Cow position:
               
chr3:15443627-15443861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
31, 47
               

               
Conread position:
               
112-357
               

               
Cow position:
               
chr3:78093287-78093528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
128, 144
               

               
Conread position:
               
112-359
               

               
Cow position:
               
chr3:3883715-3883965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
164, 8
               

               
Conread position:
               
112-370
               

               
Cow position:
               
chr3:15153793-15153535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
112-381
               

               
Cow position:
               
chr3:34871667-34871400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
112-401
               

               
Cow position:
               
chr3:59597278-59596995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
164, 8
               

               
Conread position:
               
112-428
               

               
Cow position:
               
chr3:70609729-70609409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 79
               

               
Conread position:
               
112-431
               

               
Cow position:
               
chr3:55712542-55712209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
128, 132
               

               
Conread position:
               
112-472
               

               
Cow position:
               
chr3:3556647-3556287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
202, 109
               

               
Conread position:
               
112-474
               

               
Cow position:
               
chr3:52608284-52607924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 194
               

               
Conread position:
               
112-477
               

               
Cow position:
               
chr3:75080862-75080504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 31
               

               
Conread position:
               
112-497
               

               
Cow position:
               
chr3:14801846-14801469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
112-522
               

               
Cow position:
               
chr3:59610617-59611023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 8
               

               
Conread position:
               
112-528
               

               
Cow position:
               
chr3:14601602-14602028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
112-540
               

               
Cow position:
               
chr3:17934835-17935252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 159
               

               
Conread position:
               
112-553
               

               
Cow position:
               
chr3:210421-209982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 135
               

               
Conread position:
               
112-584
               

               
Cow position:
               
chr3:60597642-60597183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 8
               

               
Conread position:
               
112-591
               

               
Cow position:
               
chr3:10958138-10958603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 259
               

               
Conread position:
               
112-591
               

               
Cow position:
               
chr3:18067234-18066756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
112-595
               

               
Cow position:
               
chr3:53222115-53221646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 148
               

               
Conread position:
               
112-610
               

               
Cow position:
               
chr3:7337684-7338174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
266, 8
               

               
Conread position:
               
112-610
               

               
Cow position:
               
chr3:30180188-30179687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
112-610
               

               
Cow position:
               
chr3:75050516-75051026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
112-612
               

               
Cow position:
               
chr3:7566316-7566813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
112-627
               

               
Cow position:
               
chr3:11254066-11254559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
112-630
               

               
Cow position:
               
chr3:80565069-80564540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 130
               

               
Conread position:
               
112-636
               

               
Cow position:
               
chr3:12711813-12712351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
113-246
               

               
Cow position:
               
chr3:67407265-67407397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
113-261
               

               
Cow position:
               
chr3:38100244-38100094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
113-265
               

               
Cow position:
               
chr3:53083883-53084039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
113-267
               

               
Cow position:
               
chr3:64648591-64648439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
113-269
               

               
Cow position:
               
chr3:82629416-82629261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-275
               

               
Cow position:
               
chr3:21997687-21997850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
113-298
               

               
Cow position:
               
chr3:4481043-4480858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
151, 118
               

               
Conread position:
               
113-303
               

               
Cow position:
               
chr3:15173180-15172991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
144, 18
               

               
Conread position:
               
113-305
               

               
Cow position:
               
chr3:44330336-44330527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr3:19626409-19626606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
158, 54
               

               
Conread position:
               
113-313
               

               
Cow position:
               
chr3:31361526-31361321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
105, 128
               

               
Conread position:
               
113-319
               

               
Cow position:
               
chr3:69785524-69785730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
113-322
               

               
Cow position:
               
chr3:3316715-3316918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
113-322
               

               
Cow position:
               
chr3:22165315-22165523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
113-323
               

               
Cow position:
               
chr3:9117127-9116921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
113-324
               

               
Cow position:
               
chr3:15950816-15951019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
127, 7
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr3:35621403-35621176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
7, 109
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr3:84175721-84175957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 148
               

               
Conread position:
               
113-362
               

               
Cow position:
               
chr3:22221430-22221170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 94
               

               
Conread position:
               
113-365
               

               
Cow position:
               
chr3:55177643-55177905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
113-369
               

               
Cow position:
               
chr3:26874690-26874433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
160, 8
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr3:53508712-53508460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
113-376
               

               
Cow position:
               
chr3:59883967-59884236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
7, 152
               

               
Conread position:
               
113-401
               

               
Cow position:
               
chr3:76267874-76268170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
158, 266
               

               
Conread position:
               
113-405
               

               
Cow position:
               
chr3:57274162-57273872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-411
               

               
Cow position:
               
chr3:49790711-49791009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
124, 139
               

               
Conread position:
               
113-431
               

               
Cow position:
               
chr3:4319811-4319494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
113-437
               

               
Cow position:
               
chr3:83215363-83215031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-444
               

               
Cow position:
               
chr3:59621547-59621865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
125, 131
               

               
Conread position:
               
113-471
               

               
Cow position:
               
chr3:18687007-18686660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
201, 151
               

               
Conread position:
               
113-473
               

               
Cow position:
               
chr3:61144195-61143835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
141, 91
               

               
Conread position:
               
113-476
               

               
Cow position:
               
chr3:51233996-51234357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 20
               

               
Conread position:
               
113-485
               

               
Cow position:
               
chr3:70899991-70899630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-492
               

               
Cow position:
               
chr3:23408257-23408619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-494
               

               
Cow position:
               
chr3:57624565-57624184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-495
               

               
Cow position:
               
chr3:75158456-75158085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-497
               

               
Cow position:
               
chr3:26681715-26682075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
113-502
               

               
Cow position:
               
chr3:73467736-73467332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-503
               

               
Cow position:
               
chr3:39969761-39970160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-503
               

               
Cow position:
               
chr3:64280830-64281224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-505
               

               
Cow position:
               
chr3:23471355-23471758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
113-512
               

               
Cow position:
               
chr3:83455051-83455451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
160, 55
               

               
Conread position:
               
113-525
               

               
Cow position:
               
chr3:27274629-27274229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 76
               

               
Conread position:
               
113-535
               

               
Cow position:
               
chr3:67704645-67704216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 7
               

               
Conread position:
               
113-536
               

               
Cow position:
               
chr3:65058800-65058381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
113-553
               

               
Cow position:
               
chr3:80072230-80071777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 369
               

               
Conread position:
               
113-556
               

               
Cow position:
               
chr3:17222038-17222494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 313
               

               
Conread position:
               
113-558
               

               
Cow position:
               
chr3:68707914-68708343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 7
               

               
Conread position:
               
113-568
               

               
Cow position:
               
chr3:3985422-3984974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 7
               

               
Conread position:
               
113-590
               

               
Cow position:
               
chr3:59604944-59604495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
428, 86
               

               
Conread position:
               
113-610
               

               
Cow position:
               
chr3:9641663-9641151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
113-610
               

               
Cow position:
               
chr3:17936739-17937248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 24
               

               
Conread position:
               
113-610
               

               
Cow position:
               
chr3:53046562-53047038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-610
               

               
Cow position:
               
chr3:53384179-53384681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
113-610
               

               
Cow position:
               
chr3:61224641-61225137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-612
               

               
Cow position:
               
chr3:45881999-45881506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
428, 152
               

               
Conread position:
               
113-612
               

               
Cow position:
               
chr3:59000655-59001139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 79
               

               
Conread position:
               
113-625
               

               
Cow position:
               
chr3:14552974-14552465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 7
               

               
Conread position:
               
113-630
               

               
Cow position:
               
chr3:65413178-65413704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 21
               

               
Conread position:
               
114-338
               

               
Cow position:
               
chr3:54290414-54290635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
114-421
               

               
Cow position:
               
chr3:27696880-27697189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
114-422
               

               
Cow position:
               
chr3:7661950-7661643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
179, 6
               

               
Conread position:
               
114-446
               

               
Cow position:
               
chr3:78092412-78092740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 44
               

               
Conread position:
               
114-448
               

               
Cow position:
               
chr3:27940043-27940361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
195, 94
               

               
Conread position:
               
114-543
               

               
Cow position:
               
chr3:78077291-78076864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 155
               

               
Conread position:
               
114-621
               

               
Cow position:
               
chr3:58767361-58766885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 6
               

               
Conread position:
               
114-630
               

               
Cow position:
               
chr3:73764101-73764592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 7
               

               
Conread position:
               
115-236
               

               
Cow position:
               
chr3:73421396-73421515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
115-270
               

               
Cow position:
               
chr3:49344791-49344637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
115-406
               

               
Cow position:
               
chr3:55318798-55319098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 41
               

               
Conread position:
               
115-489
               

               
Cow position:
               
chr3:54946232-54945851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 355
               

               
Conread position:
               
117-260
               

               
Cow position:
               
chr3:41652472-41652330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
117-643
               

               
Cow position:
               
chr3:24352956-24352459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
188, 16
               

               
Conread position:
               
118-354
               

               
Cow position:
               
chr3:73820273-73820511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
195, 123
               

               
Conread position:
               
118-488
               

               
Cow position:
               
chr3:525441-525081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 15
               

               
Conread position:
               
118-539
               

               
Cow position:
               
chr3:55970602-55970183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 40
               

               
Conread position:
               
118-581
               

               
Cow position:
               
chr3:36671899-36672372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
118-610
               

               
Cow position:
               
chr3:48252981-48252498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
118-623
               

               
Cow position:
               
chr3:45183736-45184252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 117
               

               
Conread position:
               
118-629
               

               
Cow position:
               
chr3:35852376-35852889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
119-265
               

               
Cow position:
               
chr3:44960911-44961055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
119-285
               

               
Cow position:
               
chr3:20334103-20333937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
14, 148
               

               
Conread position:
               
119-305
               

               
Cow position:
               
chr3:18001293-18001112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
119-311
               

               
Cow position:
               
chr3:4549121-4548920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
149, 13
               

               
Conread position:
               
119-311
               

               
Cow position:
               
chr3:47753320-47753129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
119-353
               

               
Cow position:
               
chr3:60264622-60264856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
148, 13
               

               
Conread position:
               
119-354
               

               
Cow position:
               
chr3:1785150-1785383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
121, 129
               

               
Conread position:
               
119-360
               

               
Cow position:
               
chr3:33693913-33693670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
171, 14
               

               
Conread position:
               
119-370
               

               
Cow position:
               
chr3:77582199-77581951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
194, 15
               

               
Conread position:
               
119-379
               

               
Cow position:
               
chr3:27108794-27109067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 74
               

               
Conread position:
               
119-385
               

               
Cow position:
               
chr3:48810552-48810808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
119-386
               

               
Cow position:
               
chr3:19792999-19792717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
119-386
               

               
Cow position:
               
chr3:70762029-70762298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
119-390
               

               
Cow position:
               
chr3:58764980-58765255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
150, 232
               

               
Conread position:
               
119-396
               

               
Cow position:
               
chr3:20677748-20678020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
119-402
               

               
Cow position:
               
chr3:63269317-63269034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
119-408
               

               
Cow position:
               
chr3:30940901-30940623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
104, 70
               

               
Conread position:
               
119-438
               

               
Cow position:
               
chr3:60265160-60265459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
194, 13
               

               
Conread position:
               
119-465
               

               
Cow position:
               
chr3:52651985-52652324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
119-479
               

               
Cow position:
               
chr3:73461060-73460715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 13
               

               
Conread position:
               
119-491
               

               
Cow position:
               
chr3:13507562-13507190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
119-493
               

               
Cow position:
               
chr3:32585244-32584880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
119-495
               

               
Cow position:
               
chr3:49482621-49482984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
119-497
               

               
Cow position:
               
chr3:66900639-66901024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 14
               

               
Conread position:
               
119-504
               

               
Cow position:
               
chr3:29596484-29596106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
24, 40
               

               
Conread position:
               
119-506
               

               
Cow position:
               
chr3:66884935-66885331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 79
               

               
Conread position:
               
119-561
               

               
Cow position:
               
chr3:53150425-53149978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 13
               

               
Conread position:
               
119-593
               

               
Cow position:
               
chr3:13353458-13352980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 87
               

               
Conread position:
               
119-598
               

               
Cow position:
               
chr3:11987423-11986946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
119-612
               

               
Cow position:
               
chr3:48296792-48296312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 14
               

               
Conread position:
               
119-612
               

               
Cow position:
               
chr3:77271183-77271676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 76
               

               
Conread position:
               
119-630
               

               
Cow position:
               
chr3:64010719-64011232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 28
               

               
Conread position:
               
119-640
               

               
Cow position:
               
chr3:73709140-73708635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 14
               

               
Conread position:
               
120-268
               

               
Cow position:
               
chr3:3947132-3946984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
120-306
               

               
Cow position:
               
chr3:71474312-71474498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
153, 14
               

               
Conread position:
               
120-461
               

               
Cow position:
               
chr3:55835727-55836075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
120-506
               

               
Cow position:
               
chr3:15228729-15229110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
191, 143
               

               
Conread position:
               
120-512
               

               
Cow position:
               
chr3:8394036-8393641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
77, 130
               

               
Conread position:
               
120-610
               

               
Cow position:
               
chr3:22716203-22716700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 212
               

               
Conread position:
               
120-610
               

               
Cow position:
               
chr3:50768773-50768278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 149
               

               
Conread position:
               
120-610
               

               
Cow position:
               
chr3:70565644-70566135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 152
               

               
Conread position:
               
120-610
               

               
Cow position:
               
chr3:75480093-75479622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 70
               

               
Conread position:
               
120-621
               

               
Cow position:
               
chr3:49650481-49649971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
121-259
               

               
Cow position:
               
chr3:50593822-50593957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
121-506
               

               
Cow position:
               
chr3:19006751-19006376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
121-610
               

               
Cow position:
               
chr3:29887327-29887821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 58
               

               
Conread position:
               
122-222
               

               
Cow position:
               
chr3:17531646-17531746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
122-239
               

               
Cow position:
               
chr3:35239104-35238988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
122-268
               

               
Cow position:
               
chr3:68004610-68004756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
122-378
               

               
Cow position:
               
chr3:58973387-58973138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
122-382
               

               
Cow position:
               
chr3:48072790-48073044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
256, 152
               

               
Conread position:
               
122-389
               

               
Cow position:
               
chr3:68616238-68616501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
142, 76
               

               
Conread position:
               
122-427
               

               
Cow position:
               
chr3:36375448-36375760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
122-431
               

               
Cow position:
               
chr3:45211393-45211079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
101, 117
               

               
Conread position:
               
122-505
               

               
Cow position:
               
chr3:78945747-78946129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 90
               

               
Conread position:
               
122-506
               

               
Cow position:
               
chr3:56059903-56059516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 295
               

               
Conread position:
               
122-515
               

               
Cow position:
               
chr3:82019747-82020149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 193
               

               
Conread position:
               
122-529
               

               
Cow position:
               
chr3:53270922-53270511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
122-540
               

               
Cow position:
               
chr3:59451696-59451270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
73, 136
               

               
Conread position:
               
122-543
               

               
Cow position:
               
chr3:56476774-56476355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 119
               

               
Conread position:
               
122-578
               

               
Cow position:
               
chr3:53428825-53429253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 121
               

               
Conread position:
               
122-610
               

               
Cow position:
               
chr3:16752167-16752644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 79
               

               
Conread position:
               
122-610
               

               
Cow position:
               
chr3:18459438-18459917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 15
               

               
Conread position:
               
122-610
               

               
Cow position:
               
chr3:26218961-26219458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 19
               

               
Conread position:
               
122-611
               

               
Cow position:
               
chr3:14465615-14466102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 11
               

               
Conread position:
               
122-612
               

               
Cow position:
               
chr3:48363164-48362684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 86
               

               
Conread position:
               
122-612
               

               
Cow position:
               
chr3:55271953-55272431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 124
               

               
Conread position:
               
122-612
               

               
Cow position:
               
chr3:62826527-62827012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 67
               

               
Conread position:
               
122-612
               

               
Cow position:
               
chr3:82056027-82056507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
193, 86
               

               
Conread position:
               
122-629
               

               
Cow position:
               
chr3:4050285-4049787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
192, 113
               

               
Conread position:
               
122-631
               

               
Cow position:
               
chr3:14626058-14626571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
123-287
               

               
Cow position:
               
chr3:9588553-9588709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
123-301
               

               
Cow position:
               
chr3:64196917-64196739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
123-311
               

               
Cow position:
               
chr3:49363200-49363020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
123-322
               

               
Cow position:
               
chr3:18607761-18607556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
126, 119
               

               
Conread position:
               
123-329
               

               
Cow position:
               
chr3:74846618-74846826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
154, 132
               

               
Conread position:
               
123-362
               

               
Cow position:
               
chr3:79196850-79196610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
191, 171
               

               
Conread position:
               
123-370
               

               
Cow position:
               
chr3:19585954-19585704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 77
               

               
Conread position:
               
123-473
               

               
Cow position:
               
chr3:8061217-8060874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
153, 75
               

               
Conread position:
               
123-495
               

               
Cow position:
               
chr3:57764308-57763943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 18
               

               
Conread position:
               
123-501
               

               
Cow position:
               
chr3:38691315-38691692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 106
               

               
Conread position:
               
123-507
               

               
Cow position:
               
chr3:62789083-62789496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
123-517
               

               
Cow position:
               
chr3:2216457-2216058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
123-612
               

               
Cow position:
               
chr3:9663083-9663586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
123-629
               

               
Cow position:
               
chr3:49328034-49327534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 14
               

               
Conread position:
               
123-636
               

               
Cow position:
               
chr3:53588295-53588813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 23
               

               
Conread position:
               
124-309
               

               
Cow position:
               
chr3:32409302-32409118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
116, 122
               

               
Conread position:
               
124-380
               

               
Cow position:
               
chr3:31850288-31850537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
226, 34
               

               
Conread position:
               
124-383
               

               
Cow position:
               
chr3:81039660-81039916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
40, 10
               

               
Conread position:
               
124-406
               

               
Cow position:
               
chr3:54100636-54100913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
189, 136
               

               
Conread position:
               
124-502
               

               
Cow position:
               
chr3:36100924-36100541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
131, 23
               

               
Conread position:
               
124-508
               

               
Cow position:
               
chr3:13329696-13330065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
76, 104
               

               
Conread position:
               
124-508
               

               
Cow position:
               
chr3:27532565-27532955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
124-538
               

               
Cow position:
               
chr3:74601204-74600796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 255
               

               
Conread position:
               
124-569
               

               
Cow position:
               
chr3:36204642-36204194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
124-638
               

               
Cow position:
               
chr3:50614731-50614222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 120
               

               
Conread position:
               
125-261
               

               
Cow position:
               
chr3:5305887-5305751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
115, 121
               

               
Conread position:
               
125-262
               

               
Cow position:
               
chr3:51349912-51349775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
125-303
               

               
Cow position:
               
chr3:19682786-19682605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
125-313
               

               
Cow position:
               
chr3:64135807-64135618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
115, 123
               

               
Conread position:
               
125-352
               

               
Cow position:
               
chr3:17235128-17235348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
128, 46
               

               
Conread position:
               
125-356
               

               
Cow position:
               
chr3:76156076-76155844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 115
               

               
Conread position:
               
125-399
               

               
Cow position:
               
chr3:30222280-30222002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
89, 132
               

               
Conread position:
               
125-436
               

               
Cow position:
               
chr3:11063454-11063157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
253, 25
               

               
Conread position:
               
125-452
               

               
Cow position:
               
chr3:17134423-17134102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
18, 22
               

               
Conread position:
               
125-480
               

               
Cow position:
               
chr3:73395205-73394851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
125-518
               

               
Cow position:
               
chr3:70401985-70401600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 73
               

               
Conread position:
               
125-565
               

               
Cow position:
               
chr3:71497049-71497498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 150
               

               
Conread position:
               
125-608
               

               
Cow position:
               
chr3:72391171-72390688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 113
               

               
Conread position:
               
125-610
               

               
Cow position:
               
chr3:23168977-23169467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 89
               

               
Conread position:
               
125-623
               

               
Cow position:
               
chr3:6690088-6689582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 33
               

               
Conread position:
               
125-626
               

               
Cow position:
               
chr3:80581744-80581266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 79
               

               
Conread position:
               
125-627
               

               
Cow position:
               
chr3:6873163-6873670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
126-298
               

               
Cow position:
               
chr3:10668791-10668961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
33, 75
               

               
Conread position:
               
126-376
               

               
Cow position:
               
chr3:76922575-76922826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 115
               

               
Conread position:
               
126-386
               

               
Cow position:
               
chr3:54506795-54506534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 118
               

               
Conread position:
               
126-496
               

               
Cow position:
               
chr3:77365201-77365575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 264
               

               
Conread position:
               
126-521
               

               
Cow position:
               
chr3:66292088-66292480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 165
               

               
Conread position:
               
127-447
               

               
Cow position:
               
chr3:11712052-11711721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
139, 149
               

               
Conread position:
               
128-305
               

               
Cow position:
               
chr3:81881356-81881531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
72, 102
               

               
Conread position:
               
128-386
               

               
Cow position:
               
chr3:62046750-62046487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
104, 114
               

               
Conread position:
               
128-392
               

               
Cow position:
               
chr3:26982143-26981883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
112, 29
               

               
Conread position:
               
128-428
               

               
Cow position:
               
chr3:83845998-83845691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
112, 18
               

               
Conread position:
               
128-500
               

               
Cow position:
               
chr3:5374414-5374051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 73
               

               
Conread position:
               
128-505
               

               
Cow position:
               
chr3:5097293-5096913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 135
               

               
Conread position:
               
128-505
               

               
Cow position:
               
chr3:45647766-45647387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 363
               

               
Conread position:
               
128-519
               

               
Cow position:
               
chr3:66975143-66975554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
17, 230
               

               
Conread position:
               
128-526
               

               
Cow position:
               
chr3:53739099-53739500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 135
               

               
Conread position:
               
130-239
               

               
Cow position:
               
chr3:16601526-16601417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-235
               

               
Cow position:
               
chr3:31115187-31115291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-273
               

               
Cow position:
               
chr3:23132086-23132228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
131-287
               

               
Cow position:
               
chr3:74801983-74802139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
131-353
               

               
Cow position:
               
chr3:74584290-74584077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
131-551
               

               
Cow position:
               
chr3:68881039-68881445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 21
               

               
Conread position:
               
131-594
               

               
Cow position:
               
chr3:54781921-54782392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 15
               

               
Conread position:
               
131-609
               

               
Cow position:
               
chr3:50069846-50069391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 97
               

               
Conread position:
               
131-610
               

               
Cow position:
               
chr3:59799331-59798857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 138
               

               
Conread position:
               
131-630
               

               
Cow position:
               
chr3:80740645-80740172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 77
               

               
Conread position:
               
132-406
               

               
Cow position:
               
chr3:74079555-74079834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 66
               

               
Conread position:
               
132-427
               

               
Cow position:
               
chr3:6182145-6182415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
246, 65
               

               
Conread position:
               
132-508
               

               
Cow position:
               
chr3:74533431-74533055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 114
               

               
Conread position:
               
132-512
               

               
Cow position:
               
chr3:44932595-44932217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 44
               

               
Conread position:
               
132-577
               

               
Cow position:
               
chr3:55189671-55190109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 144
               

               
Conread position:
               
133-316
               

               
Cow position:
               
chr3:75608579-75608397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
133-379
               

               
Cow position:
               
chr3:55109532-55109781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
131, 238
               

               
Conread position:
               
133-392
               

               
Cow position:
               
chr3:34669652-34669909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
182, 95
               

               
Conread position:
               
133-396
               

               
Cow position:
               
chr3:74502244-74502507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
217, 139
               

               
Conread position:
               
133-503
               

               
Cow position:
               
chr3:33252808-33253172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
181, 94
               

               
Conread position:
               
133-532
               

               
Cow position:
               
chr3:53113256-53112851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 26
               

               
Conread position:
               
133-578
               

               
Cow position:
               
chr3:59101908-59101475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 75
               

               
Conread position:
               
133-579
               

               
Cow position:
               
chr3:79884405-79884852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
133-592
               

               
Cow position:
               
chr3:28908122-28908582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 26
               

               
Conread position:
               
133-611
               

               
Cow position:
               
chr3:55085088-55085587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
133-623
               

               
Cow position:
               
chr3:2506398-2506892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 41
               

               
Conread position:
               
133-630
               

               
Cow position:
               
chr3:59474203-59473699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 131
               

               
Conread position:
               
134-275
               

               
Cow position:
               
chr3:71703555-71703417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
134-305
               

               
Cow position:
               
chr3:31350024-31350194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
134-354
               

               
Cow position:
               
chr3:73237276-73237053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
106, 114
               

               
Conread position:
               
134-365
               

               
Cow position:
               
chr3:46541749-46541980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
106, 112
               

               
Conread position:
               
134-485
               

               
Cow position:
               
chr3:45279545-45279187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
134-567
               

               
Cow position:
               
chr3:4032043-4031610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
134-612
               

               
Cow position:
               
chr3:61840355-61839892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 74
               

               
Conread position:
               
134-612
               

               
Cow position:
               
chr3:71231475-71231007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
134-640
               

               
Cow position:
               
chr3:72676171-72675659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 128
               

               
Conread position:
               
134-642
               

               
Cow position:
               
chr3:38347270-38346777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 70
               

               
Conread position:
               
135-331
               

               
Cow position:
               
chr3:63177562-63177360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
135-454
               

               
Cow position:
               
chr3:22232575-22232882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
171, 85
               

               
Conread position:
               
136-506
               

               
Cow position:
               
chr3:45534218-45534590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 61
               

               
Conread position:
               
137-313
               

               
Cow position:
               
chr3:3472117-3471941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 104
               

               
Conread position:
               
137-395
               

               
Cow position:
               
chr3:15751636-15751906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
134, 100
               

               
Conread position:
               
137-505
               

               
Cow position:
               
chr3:56300-56659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 84
               

               
Conread position:
               
137-577
               

               
Cow position:
               
chr3:58968826-58969252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 130
               

               
Conread position:
               
137-612
               

               
Cow position:
               
chr3:26920987-26920500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 108
               

               
Conread position:
               
138-444
               

               
Cow position:
               
chr3:76015368-76015070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
176, 153
               

               
Conread position:
               
139-577
               

               
Cow position:
               
chr3:22676035-22676443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 70
               

               
Conread position:
               
140-417
               

               
Cow position:
               
chr3:7940483-7940758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 68
               

               
Conread position:
               
140-455
               

               
Cow position:
               
chr3:39661383-39661690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
141-431
               

               
Cow position:
               
chr3:25945165-25944861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
80, 10
               

               
Conread position:
               
141-434
               

               
Cow position:
               
chr3:67698348-67698060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
135, 10
               

               
Conread position:
               
141-473
               

               
Cow position:
               
chr3:30008836-30009168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
141-543
               

               
Cow position:
               
chr3:2396716-2397111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 68
               

               
Conread position:
               
141-589
               

               
Cow position:
               
chr3:31206948-31206497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
141-591
               

               
Cow position:
               
chr3:49460854-49461315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
141-610
               

               
Cow position:
               
chr3:20130007-20129551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 10
               

               
Conread position:
               
141-610
               

               
Cow position:
               
chr3:61539873-61539400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 11
               

               
Conread position:
               
141-611
               

               
Cow position:
               
chr3:60933489-60933034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
141-623
               

               
Cow position:
               
chr3:75711379-75710900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 118
               

               
Conread position:
               
142-505
               

               
Cow position:
               
chr3:54049960-54050309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 5
               

               
Conread position:
               
142-565
               

               
Cow position:
               
chr3:70896120-70895694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 124
               

               
Conread position:
               
143-428
               

               
Cow position:
               
chr3:10896893-10896615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
163, 74
               

               
Conread position:
               
143-461
               

               
Cow position:
               
chr3:23444817-23445136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
97, 246
               

               
Conread position:
               
151-339
               

               
Cow position:
               
chr3:12670552-12670741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
151-401
               

               
Cow position:
               
chr3:55434392-55434141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
77, 70
               

               
Conread position:
               
151-609
               

               
Cow position:
               
chr3:31419755-31419300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 70
               

               
Conread position:
               
153-600
               

               
Cow position:
               
chr3:56582909-56582460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 169
               

               
Conread position:
               
154-342
               

               
Cow position:
               
chr3:478740-478926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
112, 50
               

               
Conread position:
               
154-356
               

               
Cow position:
               
chr3:54030341-54030139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 121
               

               
Conread position:
               
157-313
               

               
Cow position:
               
chr3:46108875-46108717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 71
               

               
Conread position:
               
158-623
               

               
Cow position:
               
chr3:66609788-66610251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 55
               

               
Conread position:
               
160-428
               

               
Cow position:
               
chr3:78896701-78896435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
137, 111
               

               
Conread position:
               
160-496
               

               
Cow position:
               
chr3:81277638-81277985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
160-574
               

               
Cow position:
               
chr3:20437602-20438022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
96, 57
               

               
Conread position:
               
160-591
               

               
Cow position:
               
chr3:72131244-72131679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 67
               

               
Conread position:
               
160-592
               

               
Cow position:
               
chr3:12674989-12675408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
139, 49
               

               
Conread position:
               
161-623
               

               
Cow position:
               
chr3:54435029-54434560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
163-386
               

               
Cow position:
               
chr3:59035091-59034861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 109
               

               
Conread position:
               
163-425
               

               
Cow position:
               
chr3:54373809-54374075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
163-428
               

               
Cow position:
               
chr3:76713274-76713535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
77, 48
               

               
Conread position:
               
163-499
               

               
Cow position:
               
chr3:49139998-49140331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
150, 61
               

               
Conread position:
               
163-505
               

               
Cow position:
               
chr3:74878538-74878894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
150, 109
               

               
Conread position:
               
163-521
               

               
Cow position:
               
chr3:65800636-65800289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 34
               

               
Conread position:
               
163-540
               

               
Cow position:
               
chr3:54903615-54903248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 58
               

               
Conread position:
               
163-587
               

               
Cow position:
               
chr3:53572701-53573121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 94
               

               
Conread position:
               
163-612
               

               
Cow position:
               
chr3:57577748-57577301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
163-621
               

               
Cow position:
               
chr3:15954034-15954486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
163-627
               

               
Cow position:
               
chr3:25690844-25690378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 81
               

               
Conread position:
               
163-627
               

               
Cow position:
               
chr3:67929209-67929684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 78
               

               
Conread position:
               
163-638
               

               
Cow position:
               
chr3:80818768-80818311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 93
               

               
Conread position:
               
164-489
               

               
Cow position:
               
chr3:70334645-70334977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
129, 100
               

               
Conread position:
               
165-484
               

               
Cow position:
               
chr3:14632934-14633255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
99, 171
               

               
Conread position:
               
165-505
               

               
Cow position:
               
chr3:17957516-17957177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
75, 79
               

               
Conread position:
               
169-327
               

               
Cow position:
               
chr3:19162656-19162502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
101, 23
               

               
Conread position:
               
169-496
               

               
Cow position:
               
chr3:17456223-17456550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
186, 106
               

               
Conread position:
               
169-529
               

               
Cow position:
               
chr3:23091931-23092300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
170-392
               

               
Cow position:
               
chr3:55819802-55819566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
171-506
               

               
Cow position:
               
chr3:71430161-71430502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 95
               

               
Conread position:
               
171-643
               

               
Cow position:
               
chr3:37186870-37186414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 66
               

               
Conread position:
               
172-422
               

               
Cow position:
               
chr3:83727209-83727458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
178, 51
               

               
Conread position:
               
172-447
               

               
Cow position:
               
chr3:21547058-21547334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
172-487
               

               
Cow position:
               
chr3:51578279-51578593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 49
               

               
Conread position:
               
172-553
               

               
Cow position:
               
chr3:48851928-48852301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 56
               

               
Conread position:
               
172-606
               

               
Cow position:
               
chr3:17694963-17695396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 55
               

               
Conread position:
               
172-622
               

               
Cow position:
               
chr3:79902538-79902092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 49
               

               
Conread position:
               
173-313
               

               
Cow position:
               
chr3:44625122-44625260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
174-463
               

               
Cow position:
               
chr3:22887889-22888162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
172, 54
               

               
Conread position:
               
175-411
               

               
Cow position:
               
chr3:53094892-53095136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 70
               

               
Conread position:
               
175-453
               

               
Cow position:
               
chr3:32183979-32184261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
88, 108
               

               
Conread position:
               
175-610
               

               
Cow position:
               
chr3:73762425-73762865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 53
               

               
Conread position:
               
176-610
               

               
Cow position:
               
chr3:33698769-33698328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
181-610
               

               
Cow position:
               
chr3:5850896-5851324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 101
               

               
Conread position:
               
198-358
               

               
Cow position:
               
chr3:75105067-75105230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
115, 153
               

               
Conread position:
               
201-612
               

               
Cow position:
               
chr3:49793409-49793014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 110
               

               
Conread position:
               
217-484
               

               
Cow position:
               
chr3:17450942-17451203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 55
               

               
Conread position:
               
225-500
               

               
Cow position:
               
chr3:19789125-19789404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 48
               
Show alignments to all cow chromosomes.