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Cow genome map

           
Conread name:
           
Lym2-sn37_F04.f
        

               
Conread position:
               
91-394
               

               
Cow position:
               
chr4:45685596-45685300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
29, 22
               

               
Conread position:
               
102-296
               

               
Cow position:
               
chr4:26012530-26012333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
102-359
               

               
Cow position:
               
chr4:48396666-48396924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
102-461
               

               
Cow position:
               
chr4:13222057-13222406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
102-497
               

               
Cow position:
               
chr4:19700225-19699833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 96
               

               
Conread position:
               
105-520
               

               
Cow position:
               
chr4:25359724-25359315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
110-589
               

               
Cow position:
               
chr4:40414507-40414991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 173
               

               
Conread position:
               
110-609
               

               
Cow position:
               
chr4:3688050-3687545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 10
               

               
Conread position:
               
111-608
               

               
Cow position:
               
chr4:21391692-21392175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 117
               

               
Conread position:
               
112-240
               

               
Cow position:
               
chr4:51083220-51083346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
112-275
               

               
Cow position:
               
chr4:36744697-36744536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
106, 86
               

               
Conread position:
               
112-275
               

               
Cow position:
               
chr4:44854170-44854333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
8, 135
               

               
Conread position:
               
112-285
               

               
Cow position:
               
chr4:38209856-38210030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
160, 0
               

               
Conread position:
               
112-292
               

               
Cow position:
               
chr4:65131333-65131514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
112-301
               

               
Cow position:
               
chr4:26830825-26830634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
120, 65
               

               
Conread position:
               
112-305
               

               
Cow position:
               
chr4:34509957-34509766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
112-308
               

               
Cow position:
               
chr4:8182520-8182715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
107, 8
               

               
Conread position:
               
112-354
               

               
Cow position:
               
chr4:19578506-19578278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
112-374
               

               
Cow position:
               
chr4:37313282-37313025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
201, 19
               

               
Conread position:
               
112-384
               

               
Cow position:
               
chr4:19119138-19118851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
112-386
               

               
Cow position:
               
chr4:61313094-61313364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
112-406
               

               
Cow position:
               
chr4:20147302-20147010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
180, 151
               

               
Conread position:
               
112-408
               

               
Cow position:
               
chr4:45076958-45077250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
112-427
               

               
Cow position:
               
chr4:38944141-38944461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 8
               

               
Conread position:
               
112-434
               

               
Cow position:
               
chr4:13344657-13344338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
112-482
               

               
Cow position:
               
chr4:7808692-7808327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 110
               

               
Conread position:
               
112-485
               

               
Cow position:
               
chr4:19709058-19708687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
8, 22
               

               
Conread position:
               
112-495
               

               
Cow position:
               
chr4:32726344-32725960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 156
               

               
Conread position:
               
112-504
               

               
Cow position:
               
chr4:7571527-7571136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 25
               

               
Conread position:
               
112-505
               

               
Cow position:
               
chr4:28771948-28772341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 257
               

               
Conread position:
               
112-506
               

               
Cow position:
               
chr4:66547650-66548031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
207, 22
               

               
Conread position:
               
112-507
               

               
Cow position:
               
chr4:7847161-7847543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
112-518
               

               
Cow position:
               
chr4:45775219-45775628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
112-521
               

               
Cow position:
               
chr4:36731307-36730900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 9
               

               
Conread position:
               
112-560
               

               
Cow position:
               
chr4:48486113-48485662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 183
               

               
Conread position:
               
112-600
               

               
Cow position:
               
chr4:7704207-7704680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
388, 21
               

               
Conread position:
               
112-610
               

               
Cow position:
               
chr4:13326835-13327335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 94
               

               
Conread position:
               
112-612
               

               
Cow position:
               
chr4:27276427-27276926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 25
               

               
Conread position:
               
112-623
               

               
Cow position:
               
chr4:26401073-26400560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
112-625
               

               
Cow position:
               
chr4:51899126-51898609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 127
               

               
Conread position:
               
112-635
               

               
Cow position:
               
chr4:23450975-23451497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 47
               

               
Conread position:
               
113-232
               

               
Cow position:
               
chr4:61887754-61887635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
113-239
               

               
Cow position:
               
chr4:29317958-29318084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
113-253
               

               
Cow position:
               
chr4:18098947-18099084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
113-254
               

               
Cow position:
               
chr4:60527298-60527157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 133
               

               
Conread position:
               
113-277
               

               
Cow position:
               
chr4:18952091-18951926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
113-278
               

               
Cow position:
               
chr4:10558655-10558489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
113-300
               

               
Cow position:
               
chr4:17851135-17851320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-305
               

               
Cow position:
               
chr4:19324092-19323900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
113-311
               

               
Cow position:
               
chr4:60719219-60719021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-323
               

               
Cow position:
               
chr4:19102764-19102975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-326
               

               
Cow position:
               
chr4:44903407-44903191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
149, 16
               

               
Conread position:
               
113-330
               

               
Cow position:
               
chr4:69290625-69290835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
113-340
               

               
Cow position:
               
chr4:19098590-19098358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr4:17084223-17084455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
124, 19
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr4:11380397-11380169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
202, 108
               

               
Conread position:
               
113-351
               

               
Cow position:
               
chr4:37675732-37675493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 47
               

               
Conread position:
               
113-360
               

               
Cow position:
               
chr4:52831901-52832149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
159, 18
               

               
Conread position:
               
113-365
               

               
Cow position:
               
chr4:25537664-25537409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 19
               

               
Conread position:
               
113-367
               

               
Cow position:
               
chr4:52779970-52779714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
113-379
               

               
Cow position:
               
chr4:59378027-59377764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-408
               

               
Cow position:
               
chr4:17186233-17186534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 96
               

               
Conread position:
               
113-428
               

               
Cow position:
               
chr4:17774236-17774547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 15
               

               
Conread position:
               
113-438
               

               
Cow position:
               
chr4:85812-85488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
113-457
               

               
Cow position:
               
chr4:10999597-10999930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
113-471
               

               
Cow position:
               
chr4:56591155-56590789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-474
               

               
Cow position:
               
chr4:12127521-12127886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
156, 175
               

               
Conread position:
               
113-476
               

               
Cow position:
               
chr4:26659418-26659060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 129
               

               
Conread position:
               
113-485
               

               
Cow position:
               
chr4:12676917-12676559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
201, 95
               

               
Conread position:
               
113-496
               

               
Cow position:
               
chr4:35982116-35981724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-497
               

               
Cow position:
               
chr4:4320873-4321272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 169
               

               
Conread position:
               
113-508
               

               
Cow position:
               
chr4:21874920-21874553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-511
               

               
Cow position:
               
chr4:46550502-46550104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-512
               

               
Cow position:
               
chr4:47348944-47348551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 96
               

               
Conread position:
               
113-518
               

               
Cow position:
               
chr4:39128655-39128244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-575
               

               
Cow position:
               
chr4:42423687-42424146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 148
               

               
Conread position:
               
113-576
               

               
Cow position:
               
chr4:44782492-44782027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-608
               

               
Cow position:
               
chr4:13693552-13694047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 376
               

               
Conread position:
               
113-610
               

               
Cow position:
               
chr4:9815231-9815731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 19
               

               
Conread position:
               
113-610
               

               
Cow position:
               
chr4:51851332-51850818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 194
               

               
Conread position:
               
113-612
               

               
Cow position:
               
chr4:33433140-33433639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-612
               

               
Cow position:
               
chr4:53134721-53134240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 156
               

               
Conread position:
               
113-612
               

               
Cow position:
               
chr4:68387912-68387412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 111
               

               
Conread position:
               
113-623
               

               
Cow position:
               
chr4:54191207-54190711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 20
               

               
Conread position:
               
113-623
               

               
Cow position:
               
chr4:65650015-65650518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 108
               

               
Conread position:
               
113-626
               

               
Cow position:
               
chr4:36893477-36892958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 21
               

               
Conread position:
               
113-630
               

               
Cow position:
               
chr4:961533-962052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 283
               

               
Conread position:
               
114-347
               

               
Cow position:
               
chr4:214132-213901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
158, 81
               

               
Conread position:
               
114-437
               

               
Cow position:
               
chr4:51769219-51768906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
211, 19
               

               
Conread position:
               
114-521
               

               
Cow position:
               
chr4:51728197-51727793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 163
               

               
Conread position:
               
114-605
               

               
Cow position:
               
chr4:24371743-24372227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
114-612
               

               
Cow position:
               
chr4:49794775-49794299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
236, 6
               

               
Conread position:
               
114-618
               

               
Cow position:
               
chr4:4084333-4084835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 149
               

               
Conread position:
               
114-621
               

               
Cow position:
               
chr4:19097404-19096902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 90
               

               
Conread position:
               
115-503
               

               
Cow position:
               
chr4:34337155-34337534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 84
               

               
Conread position:
               
115-612
               

               
Cow position:
               
chr4:53100918-53100426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 134
               

               
Conread position:
               
115-635
               

               
Cow position:
               
chr4:11871806-11872320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 128
               

               
Conread position:
               
117-316
               

               
Cow position:
               
chr4:46566356-46566557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
117-365
               

               
Cow position:
               
chr4:21874288-21874038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
150, 15
               

               
Conread position:
               
117-610
               

               
Cow position:
               
chr4:19435369-19434879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 131
               

               
Conread position:
               
118-320
               

               
Cow position:
               
chr4:66136495-66136692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
118-396
               

               
Cow position:
               
chr4:34369339-34369622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
200, 13
               

               
Conread position:
               
118-441
               

               
Cow position:
               
chr4:9681417-9681091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
118-561
               

               
Cow position:
               
chr4:508796-509230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
119-283
               

               
Cow position:
               
chr4:19431586-19431748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
119-310
               

               
Cow position:
               
chr4:46435435-46435245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
121, 13
               

               
Conread position:
               
119-323
               

               
Cow position:
               
chr4:34503407-34503202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
104, 157
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr4:30169716-30169970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 64
               

               
Conread position:
               
119-392
               

               
Cow position:
               
chr4:41370828-41371105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
23, 14
               

               
Conread position:
               
119-428
               

               
Cow position:
               
chr4:19407887-19408197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
119-428
               

               
Cow position:
               
chr4:65175034-65175341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
235, 14
               

               
Conread position:
               
119-456
               

               
Cow position:
               
chr4:24810338-24810672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
8, 80
               

               
Conread position:
               
119-488
               

               
Cow position:
               
chr4:45583012-45583385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
194, 14
               

               
Conread position:
               
119-492
               

               
Cow position:
               
chr4:63095963-63096336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 13
               

               
Conread position:
               
119-496
               

               
Cow position:
               
chr4:34641616-34641994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 13
               

               
Conread position:
               
119-499
               

               
Cow position:
               
chr4:29291625-29291254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 15
               

               
Conread position:
               
119-504
               

               
Cow position:
               
chr4:41185809-41186175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
196, 14
               

               
Conread position:
               
119-505
               

               
Cow position:
               
chr4:46455958-46456321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
119-509
               

               
Cow position:
               
chr4:17052482-17052874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
24, 14
               

               
Conread position:
               
119-540
               

               
Cow position:
               
chr4:45738364-45738788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
119-556
               

               
Cow position:
               
chr4:570903-570469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 32
               

               
Conread position:
               
119-597
               

               
Cow position:
               
chr4:28836645-28836161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
119-608
               

               
Cow position:
               
chr4:37704376-37703887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 24
               

               
Conread position:
               
119-609
               

               
Cow position:
               
chr4:65815595-65816072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 28
               

               
Conread position:
               
119-610
               

               
Cow position:
               
chr4:22101154-22101645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 14
               

               
Conread position:
               
119-621
               

               
Cow position:
               
chr4:45644206-45644706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 79
               

               
Conread position:
               
119-623
               

               
Cow position:
               
chr4:12591103-12591606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 14
               

               
Conread position:
               
119-623
               

               
Cow position:
               
chr4:38935471-38934982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
119-624
               

               
Cow position:
               
chr4:25879501-25879000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 14
               

               
Conread position:
               
120-310
               

               
Cow position:
               
chr4:49826362-49826176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
120-376
               

               
Cow position:
               
chr4:20026993-20027248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 32
               

               
Conread position:
               
120-592
               

               
Cow position:
               
chr4:56239749-56240208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
120-610
               

               
Cow position:
               
chr4:51784290-51783790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 78
               

               
Conread position:
               
120-633
               

               
Cow position:
               
chr4:12561151-12560624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 161
               

               
Conread position:
               
121-346
               

               
Cow position:
               
chr4:38156978-38157208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
121-402
               

               
Cow position:
               
chr4:52823293-52823579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
121-447
               

               
Cow position:
               
chr4:59277370-59277696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 74
               

               
Conread position:
               
121-488
               

               
Cow position:
               
chr4:3837385-3837022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 128
               

               
Conread position:
               
121-489
               

               
Cow position:
               
chr4:10379221-10378840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 359
               

               
Conread position:
               
121-630
               

               
Cow position:
               
chr4:27755192-27755708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 134
               

               
Conread position:
               
122-239
               

               
Cow position:
               
chr4:13995492-13995379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
122-269
               

               
Cow position:
               
chr4:56336774-56336629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 76
               

               
Conread position:
               
122-298
               

               
Cow position:
               
chr4:54541529-54541706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
122-315
               

               
Cow position:
               
chr4:59002031-59002216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
122-348
               

               
Cow position:
               
chr4:19333495-19333283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
122-443
               

               
Cow position:
               
chr4:13941565-13941246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
28, 40
               

               
Conread position:
               
122-454
               

               
Cow position:
               
chr4:13973861-13974196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 139
               

               
Conread position:
               
122-480
               

               
Cow position:
               
chr4:58880853-58881215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 15
               

               
Conread position:
               
122-542
               

               
Cow position:
               
chr4:19597215-19597625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 122
               

               
Conread position:
               
122-543
               

               
Cow position:
               
chr4:23600276-23599861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 119
               

               
Conread position:
               
122-564
               

               
Cow position:
               
chr4:27530227-27529778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 168
               

               
Conread position:
               
122-578
               

               
Cow position:
               
chr4:60897174-60897622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 83
               

               
Conread position:
               
122-591
               

               
Cow position:
               
chr4:4085002-4085491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 146
               

               
Conread position:
               
122-625
               

               
Cow position:
               
chr4:66172682-66173189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 180
               

               
Conread position:
               
122-630
               

               
Cow position:
               
chr4:25888726-25889251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 34
               

               
Conread position:
               
123-254
               

               
Cow position:
               
chr4:43916396-43916265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
117, 123
               

               
Conread position:
               
123-313
               

               
Cow position:
               
chr4:11969561-11969383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
123-353
               

               
Cow position:
               
chr4:12901452-12901678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
123-353
               

               
Cow position:
               
chr4:13026409-13026176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
123-426
               

               
Cow position:
               
chr4:68806120-68805832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
11, 101
               

               
Conread position:
               
123-439
               

               
Cow position:
               
chr4:28839725-28839418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 75
               

               
Conread position:
               
123-610
               

               
Cow position:
               
chr4:25197388-25197878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 23
               

               
Conread position:
               
123-610
               

               
Cow position:
               
chr4:31136863-31136373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 96
               

               
Conread position:
               
124-288
               

               
Cow position:
               
chr4:12442001-12441840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
124-288
               

               
Cow position:
               
chr4:13241731-13241570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
124-312
               

               
Cow position:
               
chr4:37991696-37991518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
124-509
               

               
Cow position:
               
chr4:59785429-59785038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
124-515
               

               
Cow position:
               
chr4:18095567-18095960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 40
               

               
Conread position:
               
124-637
               

               
Cow position:
               
chr4:45234766-45235272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
182, 117
               

               
Conread position:
               
124-637
               

               
Cow position:
               
chr4:65841661-65842162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
112, 28
               

               
Conread position:
               
125-259
               

               
Cow position:
               
chr4:60442937-60443068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 79
               

               
Conread position:
               
125-299
               

               
Cow position:
               
chr4:28701464-28701288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
144, 76
               

               
Conread position:
               
125-485
               

               
Cow position:
               
chr4:49089892-49089540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
125-497
               

               
Cow position:
               
chr4:23846946-23847317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 36
               

               
Conread position:
               
125-506
               

               
Cow position:
               
chr4:23509699-23509310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
125-561
               

               
Cow position:
               
chr4:10915731-10916169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 27
               

               
Conread position:
               
125-608
               

               
Cow position:
               
chr4:33970791-33971274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 192
               

               
Conread position:
               
125-609
               

               
Cow position:
               
chr4:59055755-59056218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 191
               

               
Conread position:
               
125-610
               

               
Cow position:
               
chr4:20327603-20328094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 111
               

               
Conread position:
               
125-610
               

               
Cow position:
               
chr4:46476840-46477319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 136
               

               
Conread position:
               
125-630
               

               
Cow position:
               
chr4:3850657-3850155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 139
               

               
Conread position:
               
125-630
               

               
Cow position:
               
chr4:29805268-29805783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
105, 83
               

               
Conread position:
               
126-312
               

               
Cow position:
               
chr4:20504982-20505161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
148, 19
               

               
Conread position:
               
126-383
               

               
Cow position:
               
chr4:54927335-54927594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
126-428
               

               
Cow position:
               
chr4:16594187-16593886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
143, 91
               

               
Conread position:
               
126-499
               

               
Cow position:
               
chr4:46591772-46591394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 132
               

               
Conread position:
               
126-512
               

               
Cow position:
               
chr4:5460757-5461135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
126-538
               

               
Cow position:
               
chr4:48961381-48961797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 74
               

               
Conread position:
               
126-610
               

               
Cow position:
               
chr4:11194290-11193804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 72
               

               
Conread position:
               
126-630
               

               
Cow position:
               
chr4:21017-20523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 138
               

               
Conread position:
               
128-298
               

               
Cow position:
               
chr4:36517380-36517551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
135, 92
               

               
Conread position:
               
128-302
               

               
Cow position:
               
chr4:20141869-20142036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
128-376
               

               
Cow position:
               
chr4:48409166-48409413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 99
               

               
Conread position:
               
128-487
               

               
Cow position:
               
chr4:42921757-42922102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 70
               

               
Conread position:
               
128-610
               

               
Cow position:
               
chr4:38952656-38952178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 138
               

               
Conread position:
               
129-491
               

               
Cow position:
               
chr4:62983460-62983813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 64
               

               
Conread position:
               
130-610
               

               
Cow position:
               
chr4:8413022-8413490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
131-324
               

               
Cow position:
               
chr4:8934-9123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
131-363
               

               
Cow position:
               
chr4:68889461-68889691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
131-369
               

               
Cow position:
               
chr4:20184802-20184573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
5, 68
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr4:44449409-44449655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
182, 67
               

               
Conread position:
               
131-379
               

               
Cow position:
               
chr4:53346431-53346176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
131-497
               

               
Cow position:
               
chr4:34630999-34630636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 29
               

               
Conread position:
               
131-498
               

               
Cow position:
               
chr4:3283347-3283716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 135
               

               
Conread position:
               
131-610
               

               
Cow position:
               
chr4:12903921-12903436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 145
               

               
Conread position:
               
131-610
               

               
Cow position:
               
chr4:61897435-61897913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 143
               

               
Conread position:
               
131-612
               

               
Cow position:
               
chr4:53208393-53207925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 158
               

               
Conread position:
               
131-623
               

               
Cow position:
               
chr4:7430420-7429923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
132-308
               

               
Cow position:
               
chr4:61235105-61235278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 52
               

               
Conread position:
               
132-406
               

               
Cow position:
               
chr4:34022486-34022766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 116
               

               
Conread position:
               
132-565
               

               
Cow position:
               
chr4:22009959-22010395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 60
               

               
Conread position:
               
133-354
               

               
Cow position:
               
chr4:39609815-39609608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
201, 40
               

               
Conread position:
               
133-392
               

               
Cow position:
               
chr4:19500994-19501249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
245, 132
               

               
Conread position:
               
133-495
               

               
Cow position:
               
chr4:19315910-19316261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 61
               

               
Conread position:
               
133-495
               

               
Cow position:
               
chr4:31348091-31348458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
133-540
               

               
Cow position:
               
chr4:12049344-12048939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 69
               

               
Conread position:
               
133-552
               

               
Cow position:
               
chr4:37935187-37935604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 130
               

               
Conread position:
               
133-578
               

               
Cow position:
               
chr4:44496468-44496037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 28
               

               
Conread position:
               
133-611
               

               
Cow position:
               
chr4:53126209-53125755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 62
               

               
Conread position:
               
133-612
               

               
Cow position:
               
chr4:66256784-66256304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 25
               

               
Conread position:
               
134-256
               

               
Cow position:
               
chr4:34653773-34653894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
134-298
               

               
Cow position:
               
chr4:42176377-42176537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
134-440
               

               
Cow position:
               
chr4:36929406-36929104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
106, 60
               

               
Conread position:
               
134-610
               

               
Cow position:
               
chr4:24001870-24002350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 29
               

               
Conread position:
               
135-338
               

               
Cow position:
               
chr4:48422973-48422770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
201, 183
               

               
Conread position:
               
136-591
               

               
Cow position:
               
chr4:17111779-17112240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 62
               

               
Conread position:
               
137-308
               

               
Cow position:
               
chr4:61478699-61478526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
137-625
               

               
Cow position:
               
chr4:65919702-65919229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 60
               

               
Conread position:
               
138-312
               

               
Cow position:
               
chr4:13990866-13991034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
138-494
               

               
Cow position:
               
chr4:54455250-54455605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 64
               

               
Conread position:
               
138-610
               

               
Cow position:
               
chr4:6653815-6653366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 57
               

               
Conread position:
               
139-398
               

               
Cow position:
               
chr4:34077044-34076787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 11
               

               
Conread position:
               
139-503
               

               
Cow position:
               
chr4:33395606-33395960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 168
               

               
Conread position:
               
139-601
               

               
Cow position:
               
chr4:30974425-30973969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
139-604
               

               
Cow position:
               
chr4:7409-7873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 12
               

               
Conread position:
               
141-395
               

               
Cow position:
               
chr4:4843155-4843415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
141-442
               

               
Cow position:
               
chr4:2885451-2885750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 10
               

               
Conread position:
               
141-473
               

               
Cow position:
               
chr4:13043352-13043028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
141-543
               

               
Cow position:
               
chr4:19008135-19007728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
141-605
               

               
Cow position:
               
chr4:51903694-51903225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 10
               

               
Conread position:
               
141-610
               

               
Cow position:
               
chr4:21257034-21257507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 271
               

               
Conread position:
               
141-610
               

               
Cow position:
               
chr4:42673265-42672790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
143-610
               

               
Cow position:
               
chr4:20139429-20139909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 41
               

               
Conread position:
               
145-610
               

               
Cow position:
               
chr4:16799100-16799569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 328
               

               
Conread position:
               
150-478
               

               
Cow position:
               
chr4:21232793-21233118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 91
               

               
Conread position:
               
155-610
               

               
Cow position:
               
chr4:4186195-4185740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
157-313
               

               
Cow position:
               
chr4:19493629-19493472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
157-344
               

               
Cow position:
               
chr4:67466796-67466607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
149, 116
               

               
Conread position:
               
158-580
               

               
Cow position:
               
chr4:11187524-11187108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 88
               

               
Conread position:
               
158-609
               

               
Cow position:
               
chr4:47730931-47730491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 187
               

               
Conread position:
               
158-621
               

               
Cow position:
               
chr4:21065109-21064644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 85
               

               
Conread position:
               
159-428
               

               
Cow position:
               
chr4:11332169-11331892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 119
               

               
Conread position:
               
160-488
               

               
Cow position:
               
chr4:59008284-59008626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
76, 238
               

               
Conread position:
               
160-494
               

               
Cow position:
               
chr4:31004338-31004667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
96, 55
               

               
Conread position:
               
160-505
               

               
Cow position:
               
chr4:51739646-51739977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
137, 49
               

               
Conread position:
               
160-515
               

               
Cow position:
               
chr4:620064-620436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 44
               

               
Conread position:
               
160-610
               

               
Cow position:
               
chr4:62771849-62772318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 117
               

               
Conread position:
               
160-630
               

               
Cow position:
               
chr4:23854251-23853802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
355, 61
               

               
Conread position:
               
163-367
               

               
Cow position:
               
chr4:13771333-13771527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 85
               

               
Conread position:
               
163-431
               

               
Cow position:
               
chr4:29106975-29106699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
69, 76
               

               
Conread position:
               
163-455
               

               
Cow position:
               
chr4:44973702-44973418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
150, 35
               

               
Conread position:
               
163-496
               

               
Cow position:
               
chr4:33612291-33612628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 80
               

               
Conread position:
               
163-505
               

               
Cow position:
               
chr4:44613073-44612729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
163-512
               

               
Cow position:
               
chr4:33623781-33623438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 73
               

               
Conread position:
               
163-603
               

               
Cow position:
               
chr4:24744338-24744789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 275
               

               
Conread position:
               
163-610
               

               
Cow position:
               
chr4:9137347-9136896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 74
               

               
Conread position:
               
163-610
               

               
Cow position:
               
chr4:12004282-12003842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 45
               

               
Conread position:
               
164-627
               

               
Cow position:
               
chr4:25806966-25806503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 80
               

               
Conread position:
               
165-473
               

               
Cow position:
               
chr4:65432216-65431903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
148, 188
               

               
Conread position:
               
165-475
               

               
Cow position:
               
chr4:6208527-6208224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 34
               

               
Conread position:
               
165-495
               

               
Cow position:
               
chr4:37691246-37691572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
168-591
               

               
Cow position:
               
chr4:8947458-8947036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 41
               

               
Conread position:
               
168-612
               

               
Cow position:
               
chr4:14470507-14470951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 44
               

               
Conread position:
               
169-499
               

               
Cow position:
               
chr4:44451578-44451262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
131, 77
               

               
Conread position:
               
169-594
               

               
Cow position:
               
chr4:23646796-23647207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 47
               

               
Conread position:
               
170-610
               

               
Cow position:
               
chr4:27540680-27540240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 127
               

               
Conread position:
               
170-630
               

               
Cow position:
               
chr4:39231460-39231925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 144
               

               
Conread position:
               
171-612
               

               
Cow position:
               
chr4:38999483-38999050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 53
               

               
Conread position:
               
172-439
               

               
Cow position:
               
chr4:31859323-31859053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
172-509
               

               
Cow position:
               
chr4:39456098-39455776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
56, 49
               

               
Conread position:
               
172-526
               

               
Cow position:
               
chr4:21371450-21371103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
128, 212
               

               
Conread position:
               
172-527
               

               
Cow position:
               
chr4:2894090-2893728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
172-540
               

               
Cow position:
               
chr4:12034325-12033958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
172-578
               

               
Cow position:
               
chr4:10905406-10905805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 63
               

               
Conread position:
               
172-578
               

               
Cow position:
               
chr4:19265632-19265224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 65
               

               
Conread position:
               
172-610
               

               
Cow position:
               
chr4:24458040-24458480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 150
               

               
Conread position:
               
172-630
               

               
Cow position:
               
chr4:23564074-23563597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chr4:13256140-13255845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
173-556
               

               
Cow position:
               
chr4:57584184-57584553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 88
               

               
Conread position:
               
174-614
               

               
Cow position:
               
chr4:15635391-15635828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
174-623
               

               
Cow position:
               
chr4:17474496-17474025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
140, 67
               

               
Conread position:
               
177-560
               

               
Cow position:
               
chr4:275514-275135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 28
               

               
Conread position:
               
182-610
               

               
Cow position:
               
chr4:19497217-19497628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 26
               

               
Conread position:
               
190-428
               

               
Cow position:
               
chr4:3689745-3689511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 58
               

               
Conread position:
               
198-591
               

               
Cow position:
               
chr4:13832575-13832982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
228-581
               

               
Cow position:
               
chr4:22215650-22216008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 64
               
Show alignments to all cow chromosomes.