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Cow genome map

           
Conread name:
           
Lym2-sn39_F12.f
        

               
Conread position:
               
1-177
               

               
Cow position:
               
chr1:33895527-33895337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr1:59674337-59674114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr1:69766312-69766088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 109
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr1:68607700-68607935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:56489687-56489405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:89425438-89425148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr1:99995245-99995535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 156
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:8554176-8553880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 292
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:18880537-18880833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 292
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:30023343-30023639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 292
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:40053203-40052911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
43, 288
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:52172623-52172919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
43, 292
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:53198641-53198344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 293
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:59210286-59210582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 292
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:79920879-79921175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
43, 292
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:87449801-87449505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
43, 292
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:88759415-88759118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 293
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr1:91718786-91719086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 296
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr1:43019973-43019674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
43, 284
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr1:40684842-40685143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 287
               

               
Conread position:
               
1-288
               

               
Cow position:
               
chr1:29950459-29950754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
43, 114
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr1:30027693-30027987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr1:89809772-89810099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
43, 212
               

               
Conread position:
               
1-333
               

               
Cow position:
               
chr1:31366229-31366595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 327
               

               
Conread position:
               
1-340
               

               
Cow position:
               
chr1:28872925-28872569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 289
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr1:97226852-97227219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 279
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr1:72656830-72656492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
43, 207
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr1:72120000-72119626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 135
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr1:1461479-1461885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 222
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr1:40953558-40953151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 206
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr1:76623100-76623537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr1:5501823-5501383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 240
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr1:42736305-42735862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 243
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr1:72981115-72980687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 106
               

               
Conread position:
               
1-428
               

               
Cow position:
               
chr1:102435179-102435622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 244
               

               
Conread position:
               
1-432
               

               
Cow position:
               
chr1:5318608-5318177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
49, 267
               

               
Conread position:
               
1-438
               

               
Cow position:
               
chr1:56194083-56194536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 289
               

               
Conread position:
               
1-441
               

               
Cow position:
               
chr1:62244800-62245258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 277
               

               
Conread position:
               
1-442
               

               
Cow position:
               
chr1:52233263-52233685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 31
               

               
Conread position:
               
1-444
               

               
Cow position:
               
chr1:69922615-69923074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 275
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr1:25180183-25180645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 276
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr1:79457119-79457584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 275
               

               
Conread position:
               
1-449
               

               
Cow position:
               
chr1:85881590-85881133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
1-451
               

               
Cow position:
               
chr1:13253590-13254046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
1-455
               

               
Cow position:
               
chr1:42176548-42176986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
36, 74
               

               
Conread position:
               
1-464
               

               
Cow position:
               
chr1:25549911-25549426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 289
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:93854368-93853858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 274
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr1:17941963-17942498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 356
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:38414655-38414170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 150
               

               
Conread position:
               
1-505
               

               
Cow position:
               
chr1:18406342-18406842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 193
               

               
Conread position:
               
1-538
               

               
Cow position:
               
chr1:49974343-49974900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 240
               

               
Conread position:
               
1-538
               

               
Cow position:
               
chr1:62805958-62806511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 238
               

               
Conread position:
               
1-538
               

               
Cow position:
               
chr1:86699370-86699930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 277
               

               
Conread position:
               
1-539
               

               
Cow position:
               
chr1:8824907-8824349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 269
               

               
Conread position:
               
1-539
               

               
Cow position:
               
chr1:79335957-79336504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
1-544
               

               
Cow position:
               
chr1:17012888-17013475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 405
               

               
Conread position:
               
1-554
               

               
Cow position:
               
chr1:55323674-55324250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 386
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr1:28722640-28722102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 187
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr1:28801578-28802127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 208
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr1:42290241-42289707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
1-556
               

               
Cow position:
               
chr1:88635223-88634676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 203
               

               
Conread position:
               
1-558
               

               
Cow position:
               
chr1:13645579-13645022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 201
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:3386159-3386726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 274
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:55776002-55775425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 271
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:57567798-57567232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 275
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:58335684-58335110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 243
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:69402840-69402262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
595
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 160
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:72187025-72187601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
593
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:76545695-76546272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
597
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:76752803-76753380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:85780930-85781503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 291
               

               
Conread position:
               
1-559
               

               
Cow position:
               
chr1:88130606-88130033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 190
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr1:18244540-18245144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
459
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 157
               

               
Conread position:
               
1-588
               

               
Cow position:
               
chr1:79637087-79637702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:17036710-17037338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
631
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:20828737-20828117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:39543619-39542979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
641
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:55276638-55277264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:61308850-61308224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:62925461-62924834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 394
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:82564352-82563719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
636
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 398
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:82652485-82651850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
1-593
               

               
Cow position:
               
chr1:91898849-91898215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
638
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
1-595
               

               
Cow position:
               
chr1:11292256-11292903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 361
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr1:86548284-86548570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
2-285
               

               
Cow position:
               
chr1:80359319-80359622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
42, 290
               

               
Conread position:
               
2-451
               

               
Cow position:
               
chr1:86609048-86608587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr1:57367285-57367812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 274
               

               
Conread position:
               
2-538
               

               
Cow position:
               
chr1:22000109-22000657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 284
               

               
Conread position:
               
2-543
               

               
Cow position:
               
chr1:62853979-62854518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 186
               

               
Conread position:
               
2-559
               

               
Cow position:
               
chr1:63605936-63606513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 274
               

               
Conread position:
               
2-591
               

               
Cow position:
               
chr1:40513650-40514253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
450
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 83
               

               
Conread position:
               
2-593
               

               
Cow position:
               
chr1:31396263-31395634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 109
               

               
Conread position:
               
2-593
               

               
Cow position:
               
chr1:67835291-67835921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
2-593
               

               
Cow position:
               
chr1:85791538-85790910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
634
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 479
               

               
Conread position:
               
2-595
               

               
Cow position:
               
chr1:71562728-71563366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
642
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
3-151
               

               
Cow position:
               
chr1:40307914-40307756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
3-226
               

               
Cow position:
               
chr1:89770836-89771072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chr1:25887299-25887738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 100
               

               
Conread position:
               
3-444
               

               
Cow position:
               
chr1:76703524-76703958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 10
               

               
Conread position:
               
3-559
               

               
Cow position:
               
chr1:33550769-33550194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 290
               

               
Conread position:
               
3-559
               

               
Cow position:
               
chr1:100597536-100598111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 273
               

               
Conread position:
               
4-187
               

               
Cow position:
               
chr1:87207566-87207775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
4-440
               

               
Cow position:
               
chr1:52918772-52919196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 8
               

               
Conread position:
               
4-449
               

               
Cow position:
               
chr1:34689187-34688742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
4-558
               

               
Cow position:
               
chr1:69536755-69536217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 184
               

               
Conread position:
               
4-558
               

               
Cow position:
               
chr1:87244644-87244084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 203
               

               
Conread position:
               
4-558
               

               
Cow position:
               
chr1:101149686-101149134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 8
               

               
Conread position:
               
4-591
               

               
Cow position:
               
chr1:67286335-67285743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
6-440
               

               
Cow position:
               
chr1:63501304-63500852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
15, 115
               

               
Conread position:
               
6-556
               

               
Cow position:
               
chr1:101858139-101858682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 201
               

               
Conread position:
               
6-588
               

               
Cow position:
               
chr1:89740400-89740994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
456
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 142
               

               
Conread position:
               
8-193
               

               
Cow position:
               
chr1:45097549-45097367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
29, 74
               

               
Conread position:
               
9-383
               

               
Cow position:
               
chr1:37420134-37420524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 254
               

               
Conread position:
               
9-464
               

               
Cow position:
               
chr1:73071178-73071661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 265
               

               
Conread position:
               
9-556
               

               
Cow position:
               
chr1:89899862-89900399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 197
               

               
Conread position:
               
9-556
               

               
Cow position:
               
chr1:97123672-97123134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 197
               

               
Conread position:
               
11-283
               

               
Cow position:
               
chr1:57656396-57656103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
33, 281
               

               
Conread position:
               
31-559
               

               
Cow position:
               
chr1:3934353-3934871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
35-593
               

               
Cow position:
               
chr1:30283816-30284389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
10, 24
               

               
Conread position:
               
36-488
               

               
Cow position:
               
chr1:11863457-11863936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 11
               

               
Conread position:
               
42-268
               

               
Cow position:
               
chr1:6708291-6708532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
42-268
               

               
Cow position:
               
chr1:8027341-8027584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
42-275
               

               
Cow position:
               
chr1:30283803-30284040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
42-275
               

               
Cow position:
               
chr1:97560517-97560271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 108
               

               
Conread position:
               
42-539
               

               
Cow position:
               
chr1:82918858-82919346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 55
               

               
Conread position:
               
42-554
               

               
Cow position:
               
chr1:33711860-33711347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 41
               

               
Conread position:
               
42-593
               

               
Cow position:
               
chr1:58224095-58223513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 62
               

               
Conread position:
               
43-316
               

               
Cow position:
               
chr1:102555886-102555609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
36, 18
               

               
Conread position:
               
43-449
               

               
Cow position:
               
chr1:20988560-20988152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
141, 45
               

               
Conread position:
               
43-449
               

               
Cow position:
               
chr1:69287758-69288160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
43-449
               

               
Cow position:
               
chr1:98661497-98661914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
137, 68
               

               
Conread position:
               
50-275
               

               
Cow position:
               
chr1:13449983-13449743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
42, 236
               

               
Conread position:
               
55-504
               

               
Cow position:
               
chr1:72080265-72079804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 211
               

               
Conread position:
               
56-445
               

               
Cow position:
               
chr1:72135223-72134824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 201
               

               
Conread position:
               
57-449
               

               
Cow position:
               
chr1:61732838-61732446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
119, 12
               

               
Conread position:
               
68-539
               

               
Cow position:
               
chr1:94659651-94659167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 215
               

               
Conread position:
               
70-286
               

               
Cow position:
               
chr1:56722904-56722674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 216
               

               
Conread position:
               
71-289
               

               
Cow position:
               
chr1:21087172-21086947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
107, 28
               

               
Conread position:
               
77-410
               

               
Cow position:
               
chr1:82346276-82346603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
104, 152
               

               
Conread position:
               
79-593
               

               
Cow position:
               
chr1:37455470-37454952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 144
               

               
Conread position:
               
99-448
               

               
Cow position:
               
chr1:53046204-53046558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 11
               

               
Conread position:
               
150-559
               

               
Cow position:
               
chr1:91893316-91893725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 127
               

               
Conread position:
               
151-581
               

               
Cow position:
               
chr1:43019771-43019343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
159-598
               

               
Cow position:
               
chr1:91719002-91719440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
23, 38
               

               
Conread position:
               
190-593
               

               
Cow position:
               
chr1:59210520-59210931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
191-440
               

               
Cow position:
               
chr1:31344738-31344978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
196-593
               

               
Cow position:
               
chr1:33895122-33894716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
203-400
               

               
Cow position:
               
chr1:87207997-87208195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 67
               

               
Conread position:
               
212-595
               

               
Cow position:
               
chr1:78289675-78289287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
97, 65
               

               
Conread position:
               
215-593
               

               
Cow position:
               
chr1:53364322-53363939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
224-593
               

               
Cow position:
               
chr1:56162915-56162538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
7, 150
               

               
Conread position:
               
229-587
               

               
Cow position:
               
chr1:56722709-56722333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
10, 138
               

               
Conread position:
               
231-593
               

               
Cow position:
               
chr1:21086984-21086612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
28, 140
               

               
Conread position:
               
235-575
               

               
Cow position:
               
chr1:38388112-38388435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
206, 33
               

               
Conread position:
               
236-558
               

               
Cow position:
               
chr1:45097207-45096880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 135
               

               
Conread position:
               
247-449
               

               
Cow position:
               
chr1:89478779-89478578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 89
               

               
Conread position:
               
247-591
               

               
Cow position:
               
chr1:77121995-77122327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
67, 18
               

               
Conread position:
               
260-440
               

               
Cow position:
               
chr1:8971425-8971605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
52, 7
               

               
Conread position:
               
265-449
               

               
Cow position:
               
chr1:52323470-52323285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
49, 77
               

               
Conread position:
               
265-593
               

               
Cow position:
               
chr1:89771326-89771651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
49, 134
               

               
Conread position:
               
266-493
               

               
Cow position:
               
chr1:9382709-9382939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
45, 5
               

               
Conread position:
               
271-582
               

               
Cow position:
               
chr1:89425122-89424806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
41, 97
               

               
Conread position:
               
271-593
               

               
Cow position:
               
chr1:6708559-6708888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
41, 92
               

               
Conread position:
               
271-593
               

               
Cow position:
               
chr1:33850791-33850463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
43, 96
               

               
Conread position:
               
271-593
               

               
Cow position:
               
chr1:53198323-53197996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 67
               

               
Conread position:
               
271-593
               

               
Cow position:
               
chr1:57656090-57655763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
271-593
               

               
Cow position:
               
chr1:79921196-79921522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
271-593
               

               
Cow position:
               
chr1:87449484-87449156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
271-593
               

               
Cow position:
               
chr1:88759097-88758768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
271-593
               

               
Cow position:
               
chr1:102548729-102548418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
271-600
               

               
Cow position:
               
chr1:52172940-52173282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
278-556
               

               
Cow position:
               
chr1:59672647-59672369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
34, 93
               

               
Conread position:
               
315-600
               

               
Cow position:
               
chr1:100976445-100976728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
129, 53
               

               
Conread position:
               
353-546
               

               
Cow position:
               
chr1:74562564-74562371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 15
               
Show alignments to all cow chromosomes.