Cow genome map

Conread name: Lym2-sn39_F12.f

Conread position: 1-188
Cow position: chr10:61297202-61297005 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 151

Conread position: 1-217
Cow position: chr10:25565374-25565600 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 110

Conread position: 1-222
Cow position: chr10:25359271-25359042 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 162

Conread position: 1-252
Cow position: chr10:38847245-38846978 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 1-269
Cow position: chr10:51952730-51953021 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 1-275
Cow position: chr10:32578175-32577877 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 43, 294

Conread position: 1-285
Cow position: chr10:41157322-41157023 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 214
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 62

Conread position: 1-286
Cow position: chr10:280748-281054 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 292

Conread position: 1-286
Cow position: chr10:14803706-14803401 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 43, 289

Conread position: 1-410
Cow position: chr10:42109605-42109184 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 273
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 23, 120

Conread position: 1-411
Cow position: chr10:14859849-14859434 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 290
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 43, 96

Conread position: 1-422
Cow position: chr10:62408980-62409416 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 292

Conread position: 1-441
Cow position: chr10:39041433-39041889 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 275

Conread position: 1-443
Cow position: chr10:124181-123741 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 88

Conread position: 1-443
Cow position: chr10:38538622-38539076 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 78

Conread position: 1-445
Cow position: chr10:60489538-60489071 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 160

Conread position: 1-449
Cow position: chr10:1375408-1374948 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 274

Conread position: 1-449
Cow position: chr10:49310406-49309955 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 120

Conread position: 1-458
Cow position: chr10:19511477-19511011 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 264

Conread position: 1-464
Cow position: chr10:32064024-32063541 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 325
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 125

Conread position: 1-489
Cow position: chr10:19143467-19143978 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 298

Conread position: 1-504
Cow position: chr10:37769694-37769174 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 285

Conread position: 1-513
Cow position: chr10:29696113-29695591 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 93

Conread position: 1-538
Cow position: chr10:10581545-10580969 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 398

Conread position: 1-554
Cow position: chr10:29632989-29633516 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 393
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 43, 18

Conread position: 1-556
Cow position: chr10:276465-275913 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 208

Conread position: 1-556
Cow position: chr10:62216478-62215926 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 207

Conread position: 1-556
Cow position: chr10:62778215-62777657 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 1-558
Cow position: chr10:25498227-25497665 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 206

Conread position: 1-559
Cow position: chr10:22101113-22100534 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 273

Conread position: 1-559
Cow position: chr10:29846738-29847322 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 290

Conread position: 1-559
Cow position: chr10:32650604-32650037 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 112

Conread position: 1-559
Cow position: chr10:37060801-37060222 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 11

Conread position: 1-587
Cow position: chr10:11685792-11686420 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 401

Conread position: 1-593
Cow position: chr10:19840024-19839402 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 73

Conread position: 1-593
Cow position: chr10:21400800-21401437 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 624

Conread position: 1-593
Cow position: chr10:39179655-39179020 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 411
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 45, 400

Conread position: 1-593
Cow position: chr10:39817478-39818116 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 1-593
Cow position: chr10:41876790-41876148 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 408

Conread position: 1-593
Cow position: chr10:47906649-47906023 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 395
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 31, 156

Conread position: 1-593
Cow position: chr10:55092982-55092342 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 409

Conread position: 2-217
Cow position: chr10:54059481-54059707 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 42, 222

Conread position: 2-275
Cow position: chr10:41566981-41566688 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 42, 289

Conread position: 2-538
Cow position: chr10:21486787-21486235 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 271

Conread position: 2-559
Cow position: chr10:7282812-7283381 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 270

Conread position: 2-592
Cow position: chr10:21740878-21741521 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 412
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 42, 374

Conread position: 3-449
Cow position: chr10:38345493-38345966 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 290

Conread position: 3-473
Cow position: chr10:14885980-14886452 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 319
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 9, 88

Conread position: 3-489
Cow position: chr10:57990094-57990590 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 272

Conread position: 4-187
Cow position: chr10:42628535-42628347 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 37, 127

Conread position: 4-286
Cow position: chr10:4192343-4192647 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 40, 290

Conread position: 4-429
Cow position: chr10:34318394-34318822 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 6

Conread position: 4-449
Cow position: chr10:4499577-4499117 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 80

Conread position: 6-193
Cow position: chr10:10478277-10478464 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 37, 20

Conread position: 6-558
Cow position: chr10:34685762-34685207 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 201

Conread position: 8-582
Cow position: chr10:31523704-31523133 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 88

Conread position: 8-593
Cow position: chr10:57559687-57560319 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 412
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 558

Conread position: 9-444
Cow position: chr10:46191238-46190799 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 65

Conread position: 32-348
Cow position: chr10:28116606-28116930 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 223
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 68, 116

Conread position: 42-312
Cow position: chr10:19715222-19715497 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 56, 133

Conread position: 42-544
Cow position: chr10:21467079-21466530 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 362
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 50, 0

Conread position: 42-591
Cow position: chr10:38546399-38546964 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 108

Conread position: 43-449
Cow position: chr10:24299029-24299443 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 84

Conread position: 47-440
Cow position: chr10:15862479-15862854 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 264
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 83

Conread position: 50-590
Cow position: chr10:54127275-54126735 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 83

Conread position: 51-422
Cow position: chr10:8289785-8289404 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 219

Conread position: 53-455
Cow position: chr10:14951526-14951131 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 76

Conread position: 84-451
Cow position: chr10:20537201-20536849 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 245
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 95, 44

Conread position: 89-559
Cow position: chr10:1938070-1938512 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 313
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 91, 105

Conread position: 90-275
Cow position: chr10:19497143-19497337 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 14

Conread position: 93-591
Cow position: chr10:42736274-42735778 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 104

Conread position: 115-559
Cow position: chr10:37040832-37040384 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 316
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 65, 55

Conread position: 151-593
Cow position: chr10:32654433-32653990 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 285
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 161, 34

Conread position: 179-599
Cow position: chr10:61296981-61296549 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 11

Conread position: 186-591
Cow position: chr10:42628139-42627736 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 10

Conread position: 219-558
Cow position: chr10:41144682-41145012 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 51, 73

Conread position: 229-447
Cow position: chr10:281019-281242 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 10, 138

Conread position: 229-593
Cow position: chr10:25565659-25566031 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 251
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 10, 112

Conread position: 230-559
Cow position: chr10:2123776-2124102 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 84, 40

Conread position: 261-582
Cow position: chr10:41566673-41566349 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 50, 102

Conread position: 271-593
Cow position: chr10:4192658-4192986 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 43, 96

Conread position: 271-593
Cow position: chr10:19497358-19497686 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 43, 96

Conread position: 271-593
Cow position: chr10:28641044-28640715 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 217
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 41, 96

Conread position: 271-593
Cow position: chr10:41157011-41156683 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 225
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 44, 92

Conread position: 271-593
Cow position: chr10:51953047-51953375 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 41, 96

Conread position: 275-558
Cow position: chr10:40425276-40424985 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 39, 14

Conread position: 275-591
Cow position: chr10:39780265-39780589 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 96

Conread position: 280-593
Cow position: chr10:14803384-14803071 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 87

Show alignments to all cow chromosomes.