Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-194 |
| Cow position: | chr12:14662814-14663020 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-219 |
| Cow position: | chr12:8310982-8310745 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-275 |
| Cow position: | chr12:21254859-21255148 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 1-275 |
| Cow position: | chr12:26141610-26141314 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-306 |
| Cow position: | chr12:15951459-15951780 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 228 |
| Conread position: | 1-402 |
| Cow position: | chr12:2595-2195 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 185 |
| Conread position: | 1-425 |
| Cow position: | chr12:22026554-22026134 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 207 |
| Conread position: | 1-429 |
| Cow position: | chr12:1868266-1867824 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 1-440 |
| Cow position: | chr12:3360700-3360222 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 1-443 |
| Cow position: | chr12:16326526-16326094 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 51 |
| Conread position: | 1-444 |
| Cow position: | chr12:11098038-11097579 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-449 |
| Cow position: | chr12:2839793-2840252 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 322 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 44, 136 |
| Conread position: | 1-464 |
| Cow position: | chr12:25101265-25101760 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 1-539 |
| Cow position: | chr12:6406850-6407401 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 127 |
| Conread position: | 1-541 |
| Cow position: | chr12:27933155-27933704 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 279 |
| Conread position: | 1-541 |
| Cow position: | chr12:42860018-42860572 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 275 |
| Conread position: | 1-558 |
| Cow position: | chr12:21901743-21901214 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 1-559 |
| Cow position: | chr12:8678321-8678882 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 276 |
| Conread position: | 1-593 |
| Cow position: | chr12:43031586-43032219 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 1-595 |
| Cow position: | chr12:20998323-20998942 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 273 |
| Conread position: | 2-428 |
| Cow position: | chr12:252261-252703 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 163 |
| Conread position: | 2-558 |
| Cow position: | chr12:22332417-22331849 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 2-576 |
| Cow position: | chr12:21207493-21206870 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 401 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 371 |
| Conread position: | 2-587 |
| Cow position: | chr12:37558355-37557720 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 411 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-593 |
| Cow position: | chr12:21426492-21425857 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 3-508 |
| Cow position: | chr12:2282340-2281810 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 4-530 |
| Cow position: | chr12:21197626-21197075 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 8-449 |
| Cow position: | chr12:21499908-21499454 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 307 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 87 |
| Conread position: | 31-218 |
| Cow position: | chr12:21941540-21941342 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 31-552 |
| Cow position: | chr12:26947494-26948016 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 184 |
| Conread position: | 42-275 |
| Cow position: | chr12:21883775-21883525 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 243 |
| Conread position: | 42-275 |
| Cow position: | chr12:32653296-32653048 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 50, 244 |
| Conread position: | 42-444 |
| Cow position: | chr12:1402242-1401833 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 46-559 |
| Cow position: | chr12:22206000-22206513 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 219 |
| Conread position: | 145-389 |
| Cow position: | chr12:9708819-9709087 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 214 |
| Conread position: | 154-489 |
| Cow position: | chr12:28766466-28766810 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 160-559 |
| Cow position: | chr12:45261278-45260878 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 164-591 |
| Cow position: | chr12:22121347-22120913 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 186-591 |
| Cow position: | chr12:21058370-21058778 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 191 |
| Conread position: | 187-446 |
| Cow position: | chr12:48404368-48404109 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 202-577 |
| Cow position: | chr12:32183125-32182750 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 171 |
| Conread position: | 229-593 |
| Cow position: | chr12:7425177-7424802 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 142 |
| Conread position: | 229-593 |
| Cow position: | chr12:21883550-21883172 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 10, 138 |
| Conread position: | 229-593 |
| Cow position: | chr12:26141339-26140964 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 235-430 |
| Cow position: | chr12:21941057-21940864 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 255-593 |
| Cow position: | chr12:32653043-32652692 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 277-558 |
| Cow position: | chr12:26795689-26795410 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 198 |
| Conread position: | 278-552 |
| Cow position: | chr12:23238924-23238657 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 166, 34 |
| Conread position: | 278-554 |
| Cow position: | chr12:8310555-8310276 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 93 |
| Conread position: | 278-562 |
| Cow position: | chr12:14663229-14663528 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 294-588 |
| Cow position: | chr12:15954196-15954488 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 330-556 |
| Cow position: | chr12:41706772-41706547 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 114, 38 |
Show alignments to all cow chromosomes.