Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-190 |
| Cow position: | chr13:3058417-3058620 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-233 |
| Cow position: | chr13:30140569-30140318 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 33, 155 |
| Conread position: | 1-254 |
| Cow position: | chr13:41607266-41607018 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 93, 37 |
| Conread position: | 1-285 |
| Cow position: | chr13:21840619-21840925 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 43, 293 |
| Conread position: | 1-289 |
| Cow position: | chr13:32986470-32986777 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 11, 174 |
| Conread position: | 1-401 |
| Cow position: | chr13:3654735-3655147 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 294 |
| Conread position: | 1-432 |
| Cow position: | chr13:4940662-4940215 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 243 |
| Conread position: | 1-440 |
| Cow position: | chr13:2908868-2909310 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 207 |
| Conread position: | 1-443 |
| Cow position: | chr13:32738245-32738689 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 1-444 |
| Cow position: | chr13:31612760-31613217 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 242 |
| Conread position: | 1-449 |
| Cow position: | chr13:2232235-2231805 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 1-464 |
| Cow position: | chr13:4482052-4481589 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 230 |
| Conread position: | 1-464 |
| Cow position: | chr13:15520938-15521428 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 375 |
| Conread position: | 1-464 |
| Cow position: | chr13:32544523-32544047 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 268 |
| Conread position: | 1-470 |
| Cow position: | chr13:34326101-34326603 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 1-489 |
| Cow position: | chr13:33336747-33337251 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 288 |
| Conread position: | 1-492 |
| Cow position: | chr13:34187112-34187614 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 207 |
| Conread position: | 1-538 |
| Cow position: | chr13:9044086-9043548 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 159 |
| Conread position: | 1-538 |
| Cow position: | chr13:15543041-15542487 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 243 |
| Conread position: | 1-539 |
| Cow position: | chr13:15924807-15925364 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 289 |
| Conread position: | 1-539 |
| Cow position: | chr13:34042789-34043343 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 154 |
| Conread position: | 1-556 |
| Cow position: | chr13:30657385-30657938 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 208 |
| Conread position: | 1-558 |
| Cow position: | chr13:33825152-33825729 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 217 |
| Conread position: | 1-558 |
| Cow position: | chr13:34692738-34692189 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 1-558 |
| Cow position: | chr13:62328006-62328564 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 1-559 |
| Cow position: | chr13:35756816-35756235 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 280 |
| Conread position: | 1-593 |
| Cow position: | chr13:2297223-2297859 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 1-593 |
| Cow position: | chr13:30245158-30245795 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 405 |
| Conread position: | 1-593 |
| Cow position: | chr13:31734505-31735140 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 180 |
| Conread position: | 1-600 |
| Cow position: | chr13:49973258-49972639 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 397 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 2-275 |
| Cow position: | chr13:4872654-4872358 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 42, 292 |
| Conread position: | 2-451 |
| Cow position: | chr13:46732776-46733214 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 2-504 |
| Cow position: | chr13:1593580-1594105 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 274 |
| Conread position: | 2-504 |
| Cow position: | chr13:30302643-30302123 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 270 |
| Conread position: | 2-556 |
| Cow position: | chr13:13046244-13046790 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 205 |
| Conread position: | 2-582 |
| Cow position: | chr13:50109041-50108433 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 290 |
| Conread position: | 3-286 |
| Cow position: | chr13:34868343-34868036 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 4-378 |
| Cow position: | chr13:54284161-54283774 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 4-425 |
| Cow position: | chr13:31832180-31831756 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 4-593 |
| Cow position: | chr13:17308053-17307421 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 405 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 30, 387 |
| Conread position: | 6-231 |
| Cow position: | chr13:34936709-34936468 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 7-434 |
| Cow position: | chr13:32525175-32525609 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 8-440 |
| Cow position: | chr13:3276726-3276287 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 197 |
| Conread position: | 8-449 |
| Cow position: | chr13:48356895-48356442 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 98 |
| Conread position: | 8-553 |
| Cow position: | chr13:33927990-33928507 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 8-558 |
| Cow position: | chr13:34143088-34143629 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 202 |
| Conread position: | 9-441 |
| Cow position: | chr13:33278795-33279227 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 176, 43 |
| Conread position: | 24-449 |
| Cow position: | chr13:15080631-15081057 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 30-228 |
| Cow position: | chr13:34911825-34912032 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 31-428 |
| Cow position: | chr13:6668584-6669009 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 358 |
| Conread position: | 31-591 |
| Cow position: | chr13:20542821-20543382 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 37-275 |
| Cow position: | chr13:2389261-2389516 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 251 |
| Conread position: | 37-595 |
| Cow position: | chr13:61951723-61951155 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 8 |
| Conread position: | 42-250 |
| Cow position: | chr13:30237698-30237491 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 42-593 |
| Cow position: | chr13:53834300-53833702 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 392 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 43-449 |
| Cow position: | chr13:34767713-34768093 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 178, 28 |
| Conread position: | 43-593 |
| Cow position: | chr13:35030042-35029461 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 69 |
| Conread position: | 58-593 |
| Cow position: | chr13:676477-675898 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 374 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 69-434 |
| Cow position: | chr13:47859819-47859465 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 111, 169 |
| Conread position: | 103-268 |
| Cow position: | chr13:13324264-13324096 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 120 |
| Conread position: | 159-493 |
| Cow position: | chr13:34868135-34867809 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 206-426 |
| Cow position: | chr13:58716355-58716140 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 156 |
| Conread position: | 226-591 |
| Cow position: | chr13:34936198-34935818 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 148 |
| Conread position: | 229-541 |
| Cow position: | chr13:32986739-32987066 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 10, 66 |
| Conread position: | 229-593 |
| Cow position: | chr13:21840891-21841265 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 229-593 |
| Cow position: | chr13:51763933-51763558 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 271-544 |
| Cow position: | chr13:3058976-3059256 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 96 |
| Conread position: | 271-593 |
| Cow position: | chr13:2389537-2389865 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 302-556 |
| Cow position: | chr13:41594151-41593895 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 108, 66 |
Show alignments to all cow chromosomes.