Cow genome map

Conread name: Lym2-sn39_F12.f

Conread position: 1-179
Cow position: chr14:13778316-13778125 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 1-183
Cow position: chr14:16920230-16920425 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 1-269
Cow position: chr14:45672593-45672882 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 0

Conread position: 1-274
Cow position: chr14:9045017-9044727 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 174
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 40, 0

Conread position: 1-275
Cow position: chr14:750021-749733 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 43, 108

Conread position: 1-275
Cow position: chr14:30585484-30585780 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 292

Conread position: 1-290
Cow position: chr14:45850681-45850382 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 207

Conread position: 1-343
Cow position: chr14:36967711-36967364 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 207

Conread position: 1-343
Cow position: chr14:38532845-38533213 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 56

Conread position: 1-411
Cow position: chr14:34775047-34774645 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 277
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 44, 189

Conread position: 1-437
Cow position: chr14:44855973-44856410 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 206

Conread position: 1-444
Cow position: chr14:23260481-23260945 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 294
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 37, 73

Conread position: 1-446
Cow position: chr14:14309612-14310055 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 300
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 150

Conread position: 1-447
Cow position: chr14:11468051-11467600 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 184

Conread position: 1-449
Cow position: chr14:20781908-20781447 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 272

Conread position: 1-449
Cow position: chr14:48254860-48255324 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 25

Conread position: 1-455
Cow position: chr14:47589325-47588865 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 295
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 216

Conread position: 1-530
Cow position: chr14:16273844-16274395 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 276

Conread position: 1-530
Cow position: chr14:17001603-17002146 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 180

Conread position: 1-538
Cow position: chr14:22032230-22032784 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 275

Conread position: 1-548
Cow position: chr14:35387678-35388244 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 141

Conread position: 1-558
Cow position: chr14:13660535-13661089 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 213

Conread position: 1-558
Cow position: chr14:23690772-23691338 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 210

Conread position: 1-558
Cow position: chr14:41085356-41085900 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 205

Conread position: 1-559
Cow position: chr14:7471828-7471250 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 275

Conread position: 1-559
Cow position: chr14:11154701-11155278 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 275

Conread position: 1-559
Cow position: chr14:13302483-13301905 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 262

Conread position: 1-559
Cow position: chr14:17684847-17684279 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 267

Conread position: 1-562
Cow position: chr14:44685500-44684904 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 396

Conread position: 1-592
Cow position: chr14:40339163-40338535 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 150

Conread position: 1-593
Cow position: chr14:17492005-17492642 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 417
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 43, 183

Conread position: 1-593
Cow position: chr14:45916852-45916213 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 79

Conread position: 1-594
Cow position: chr14:13272710-13272098 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 264

Conread position: 1-595
Cow position: chr14:41755313-41754716 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 17

Conread position: 2-538
Cow position: chr14:50110031-50109486 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 155

Conread position: 3-188
Cow position: chr14:13326660-13326858 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 17

Conread position: 3-410
Cow position: chr14:14422560-14422975 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 288
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 41, 25

Conread position: 3-428
Cow position: chr14:44616743-44616315 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 291
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 220

Conread position: 3-550
Cow position: chr14:37223352-37222786 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 272

Conread position: 3-559
Cow position: chr14:28994405-28994984 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 288

Conread position: 4-217
Cow position: chr14:23256810-23256576 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 4-448
Cow position: chr14:44580391-44579941 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 312
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 40, 170

Conread position: 4-537
Cow position: chr14:5528516-5527963 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 271

Conread position: 4-556
Cow position: chr14:44551504-44550930 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 387

Conread position: 4-556
Cow position: chr14:45712526-45713070 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 128

Conread position: 4-590
Cow position: chr14:45205521-45204925 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 391
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 8

Conread position: 4-600
Cow position: chr14:46084074-46083466 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 72

Conread position: 5-593
Cow position: chr14:46464239-46463636 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 102

Conread position: 6-429
Cow position: chr14:47624016-47623608 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 124

Conread position: 6-517
Cow position: chr14:45767453-45766946 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 186

Conread position: 6-558
Cow position: chr14:44225860-44225283 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 18

Conread position: 8-449
Cow position: chr14:44780471-44780924 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 309
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 35, 62

Conread position: 8-449
Cow position: chr14:44782811-44783264 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 309
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 35, 62

Conread position: 9-559
Cow position: chr14:15277407-15277955 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 368
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 35, 111

Conread position: 14-591
Cow position: chr14:50134349-50133761 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 144

Conread position: 31-559
Cow position: chr14:19328850-19329394 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 240

Conread position: 31-591
Cow position: chr14:45160281-45159688 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 368

Conread position: 42-214
Cow position: chr14:29048494-29048672 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 92

Conread position: 42-275
Cow position: chr14:17241639-17241397 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 137, 238

Conread position: 42-334
Cow position: chr14:1500157-1499877 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 223
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 160

Conread position: 42-555
Cow position: chr14:44130331-44129839 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 104

Conread position: 42-558
Cow position: chr14:7831135-7831627 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 89

Conread position: 42-593
Cow position: chr14:2283392-2282804 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 187

Conread position: 43-229
Cow position: chr14:44261690-44261883 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 43, 91

Conread position: 43-275
Cow position: chr14:30596965-30597217 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 44, 248

Conread position: 43-440
Cow position: chr14:38146042-38145628 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 265
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 43, 70

Conread position: 43-449
Cow position: chr14:22018808-22018389 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 287
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 48, 250

Conread position: 43-463
Cow position: chr14:44376839-44376399 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 119

Conread position: 46-445
Cow position: chr14:36346162-36346568 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 270
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 40, 151

Conread position: 47-459
Cow position: chr14:44675817-44675402 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 285
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 92, 11

Conread position: 50-441
Cow position: chr14:35928577-35928179 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 267
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 36, 16

Conread position: 71-275
Cow position: chr14:33394428-33394647 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 215

Conread position: 72-275
Cow position: chr14:10562006-10561788 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 214

Conread position: 89-428
Cow position: chr14:45833509-45833173 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 108

Conread position: 89-593
Cow position: chr14:9044812-9044290 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 321
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 121

Conread position: 143-444
Cow position: chr14:5511487-5511184 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 42, 94

Conread position: 188-593
Cow position: chr14:30597151-30597579 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 283
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 51, 180

Conread position: 192-591
Cow position: chr14:45304383-45304790 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 41

Conread position: 205-427
Cow position: chr14:16920508-16920724 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 66

Conread position: 205-559
Cow position: chr14:755085-754735 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 238
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 50

Conread position: 229-593
Cow position: chr14:10561813-10561439 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 250
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 10, 142

Conread position: 229-593
Cow position: chr14:33394622-33394997 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 247
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 10, 142

Conread position: 235-558
Cow position: chr14:42404103-42403775 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 140

Conread position: 258-553
Cow position: chr14:42151697-42151404 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 175
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 186, 83

Conread position: 271-558
Cow position: chr14:29049241-29049535 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 43, 96

Conread position: 271-593
Cow position: chr14:9678369-9678698 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 212
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 41, 96

Conread position: 271-593
Cow position: chr14:17241376-17241049 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 41, 96

Conread position: 271-593
Cow position: chr14:30585801-30586129 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 216
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 43, 96

Conread position: 271-593
Cow position: chr14:45030232-45030553 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 182, 89

Conread position: 273-558
Cow position: chr14:45850440-45850165 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 11, 96

Conread position: 278-456
Cow position: chr14:30656124-30656305 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 34, 10

Conread position: 299-593
Cow position: chr14:46434333-46434044 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 189
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 145, 77

Conread position: 333-558
Cow position: chr14:1499101-1498869 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 111, 6

Conread position: 339-558
Cow position: chr14:36966882-36966667 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 105, 29

Show alignments to all cow chromosomes.