Cow genome map

Conread name: Lym2-sn39_F12.f

Conread position: 1-183
Cow position: chr16:27734698-27734893 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 1-187
Cow position: chr16:23982418-23982218 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 0

Conread position: 1-193
Cow position: chr16:6549415-6549620 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 165
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 43, 64

Conread position: 1-217
Cow position: chr16:32605934-32605701 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 1-219
Cow position: chr16:15369540-15369313 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 179
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 36, 132

Conread position: 1-225
Cow position: chr16:26662854-26662621 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 18

Conread position: 1-230
Cow position: chr16:42740315-42740554 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 43, 220

Conread position: 1-268
Cow position: chr16:28171252-28171543 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 43, 0

Conread position: 1-273
Cow position: chr16:31376137-31376412 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 179, 25

Conread position: 1-275
Cow position: chr16:31855-31574 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 91, 51

Conread position: 1-275
Cow position: chr16:5918591-5918292 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 295

Conread position: 1-275
Cow position: chr16:15491814-15491532 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 34, 160

Conread position: 1-275
Cow position: chr16:21185388-21185092 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 292

Conread position: 1-309
Cow position: chr16:31592800-31593130 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 276

Conread position: 1-313
Cow position: chr16:24881581-24881912 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 281

Conread position: 1-336
Cow position: chr16:43898162-43898513 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 261
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 34, 140

Conread position: 1-401
Cow position: chr16:15565857-15565444 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 293
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 273

Conread position: 1-407
Cow position: chr16:54647433-54647030 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 115

Conread position: 1-413
Cow position: chr16:14422821-14422415 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 284
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 146

Conread position: 1-426
Cow position: chr16:16687976-16687536 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 162

Conread position: 1-447
Cow position: chr16:6942729-6942234 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 334
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 43, 356

Conread position: 1-449
Cow position: chr16:15183910-15183448 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 17

Conread position: 1-450
Cow position: chr16:2728206-2728673 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 276

Conread position: 1-489
Cow position: chr16:12538818-12539327 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 272

Conread position: 1-504
Cow position: chr16:10204307-10204833 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 276

Conread position: 1-529
Cow position: chr16:5660967-5660400 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 110

Conread position: 1-539
Cow position: chr16:10437361-10436833 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 206

Conread position: 1-539
Cow position: chr16:28471989-28472546 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 275

Conread position: 1-556
Cow position: chr16:20255204-20255761 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 202

Conread position: 1-557
Cow position: chr16:29676199-29676760 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 207

Conread position: 1-559
Cow position: chr16:7676590-7677164 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 17

Conread position: 1-559
Cow position: chr16:8816998-8817575 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 274

Conread position: 1-559
Cow position: chr16:9777238-9776666 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 269

Conread position: 1-559
Cow position: chr16:25440725-25440144 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 23

Conread position: 1-559
Cow position: chr16:25458364-25458946 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 23

Conread position: 1-591
Cow position: chr16:18688022-18688629 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 81

Conread position: 1-595
Cow position: chr16:1430334-1429707 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 301

Conread position: 2-275
Cow position: chr16:23253398-23253688 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 33, 74

Conread position: 2-446
Cow position: chr16:32935247-32934785 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 95

Conread position: 2-464
Cow position: chr16:25341076-25340581 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 10

Conread position: 2-547
Cow position: chr16:29046126-29045572 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 95

Conread position: 2-559
Cow position: chr16:40297070-40297643 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 273

Conread position: 2-592
Cow position: chr16:10376165-10376795 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 107

Conread position: 3-428
Cow position: chr16:407927-408366 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 274

Conread position: 3-559
Cow position: chr16:1568348-1568917 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 157

Conread position: 4-217
Cow position: chr16:49257464-49257697 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 41, 0

Conread position: 4-426
Cow position: chr16:2484034-2484471 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 8

Conread position: 4-462
Cow position: chr16:25084726-25084248 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 163

Conread position: 6-452
Cow position: chr16:36232502-36232962 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 101

Conread position: 6-558
Cow position: chr16:19713746-19714300 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 201

Conread position: 7-299
Cow position: chr16:9929656-9929345 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 30, 9

Conread position: 7-449
Cow position: chr16:49236014-49236472 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 154

Conread position: 8-290
Cow position: chr16:25157117-25157417 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 175

Conread position: 8-448
Cow position: chr16:16029859-16029421 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 293
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 36, 69

Conread position: 8-462
Cow position: chr16:36282498-36282051 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 173

Conread position: 8-556
Cow position: chr16:7905742-7905203 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 200

Conread position: 12-388
Cow position: chr16:42051259-42051643 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 80

Conread position: 31-448
Cow position: chr16:51685514-51685096 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 288
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 13, 39

Conread position: 31-555
Cow position: chr16:11052243-11051735 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 169

Conread position: 42-186
Cow position: chr16:5483265-5483414 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 42-513
Cow position: chr16:39818685-39818213 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 160

Conread position: 42-559
Cow position: chr16:14666729-14667262 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 236

Conread position: 42-575
Cow position: chr16:29031975-29031434 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 142

Conread position: 46-189
Cow position: chr16:52815570-52815710 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 134, 44

Conread position: 47-277
Cow position: chr16:2239677-2239920 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 177
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 52, 11

Conread position: 69-449
Cow position: chr16:334997-334632 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 267
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 43, 14

Conread position: 83-428
Cow position: chr16:51083583-51083234 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 31

Conread position: 115-559
Cow position: chr16:2412037-2412484 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 54

Conread position: 125-473
Cow position: chr16:37446383-37446725 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 255
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 55, 132

Conread position: 181-489
Cow position: chr16:26661589-26661272 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 15, 98

Conread position: 181-559
Cow position: chr16:27735120-27735502 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 259
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 98

Conread position: 181-593
Cow position: chr16:49257679-49258096 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 196

Conread position: 186-449
Cow position: chr16:49955611-49955866 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 10, 54

Conread position: 191-538
Cow position: chr16:23982076-23981732 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 81

Conread position: 192-449
Cow position: chr16:44673907-44673642 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 188
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 26, 197

Conread position: 202-593
Cow position: chr16:34527641-34527242 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 17

Conread position: 215-413
Cow position: chr16:12302576-12302778 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 98, 156

Conread position: 229-593
Cow position: chr16:2240180-2240555 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 253
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 7, 142

Conread position: 234-448
Cow position: chr16:25152690-25152480 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 26

Conread position: 235-591
Cow position: chr16:15369141-15368785 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 113

Conread position: 247-445
Cow position: chr16:5888309-5888110 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 66, 141

Conread position: 259-593
Cow position: chr16:31565-31225 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 108

Conread position: 270-448
Cow position: chr16:44388703-44388887 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 271-593
Cow position: chr16:4305481-4305809 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 41, 92

Conread position: 271-593
Cow position: chr16:28171570-28171901 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 217
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 43, 96

Conread position: 277-591
Cow position: chr16:28233846-28234156 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 61

Conread position: 279-583
Cow position: chr16:11744008-11744327 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 33, 84

Conread position: 337-538
Cow position: chr16:42740952-42741149 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 107, 31

Conread position: 387-591
Cow position: chr16:23807094-23806893 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 114, 37

Show alignments to all cow chromosomes.