Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-206 |
| Cow position: | chr17:28109769-28109561 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 1-228 |
| Cow position: | chr17:15435474-15435234 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-246 |
| Cow position: | chr17:25737346-25737088 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 28, 242 |
| Conread position: | 1-275 |
| Cow position: | chr17:11783054-11782758 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-275 |
| Cow position: | chr17:14217341-14217638 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 293 |
| Conread position: | 1-275 |
| Cow position: | chr17:14893844-14893552 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 1-275 |
| Cow position: | chr17:20666043-20666333 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 43, 286 |
| Conread position: | 1-275 |
| Cow position: | chr17:22160599-22160303 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-275 |
| Cow position: | chr17:24633640-24633344 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-286 |
| Cow position: | chr17:24780731-24780429 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 288 |
| Conread position: | 1-387 |
| Cow position: | chr17:2248898-2249304 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 290 |
| Conread position: | 1-443 |
| Cow position: | chr17:152783-153229 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 102 |
| Conread position: | 1-444 |
| Cow position: | chr17:13929351-13928907 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-444 |
| Cow position: | chr17:15322511-15322062 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 1-449 |
| Cow position: | chr17:2579242-2578783 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 1-449 |
| Cow position: | chr17:14325811-14326252 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 1-489 |
| Cow position: | chr17:3643153-3643652 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 161 |
| Conread position: | 1-538 |
| Cow position: | chr17:18103997-18104559 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 275 |
| Conread position: | 1-538 |
| Cow position: | chr17:19269679-19270223 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 165 |
| Conread position: | 1-539 |
| Cow position: | chr17:11088041-11088606 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 391 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 1-539 |
| Cow position: | chr17:40804082-40803533 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 1-556 |
| Cow position: | chr17:22429799-22430342 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 1-556 |
| Cow position: | chr17:35591898-35591374 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 1-558 |
| Cow position: | chr17:27345488-27344943 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 205 |
| Conread position: | 1-558 |
| Cow position: | chr17:32024509-32025060 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 209 |
| Conread position: | 1-593 |
| Cow position: | chr17:2261793-2261160 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 110 |
| Conread position: | 1-593 |
| Cow position: | chr17:6089478-6090082 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 194 |
| Conread position: | 1-593 |
| Cow position: | chr17:15157276-15157905 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 2-173 |
| Cow position: | chr17:2173559-2173381 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 162 |
| Conread position: | 2-219 |
| Cow position: | chr17:20088069-20088300 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 186 |
| Conread position: | 2-275 |
| Cow position: | chr17:1383129-1383424 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 291 |
| Conread position: | 2-539 |
| Cow position: | chr17:13857091-13857658 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 204 |
| Conread position: | 2-586 |
| Cow position: | chr17:8208792-8208156 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 360 |
| Conread position: | 3-449 |
| Cow position: | chr17:228620-229103 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 143 |
| Conread position: | 3-456 |
| Cow position: | chr17:6259383-6258916 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 267 |
| Conread position: | 3-597 |
| Cow position: | chr17:4059789-4059181 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 300 |
| Conread position: | 4-268 |
| Cow position: | chr17:9653770-9654056 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 4-556 |
| Cow position: | chr17:44853248-44853785 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 162 |
| Conread position: | 4-591 |
| Cow position: | chr17:15370757-15370167 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 201 |
| Conread position: | 5-268 |
| Cow position: | chr17:249601-249322 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 6-446 |
| Cow position: | chr17:4081331-4080867 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 266 |
| Conread position: | 6-446 |
| Cow position: | chr17:31200387-31200848 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 259 |
| Conread position: | 6-556 |
| Cow position: | chr17:23857354-23857900 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 184 |
| Conread position: | 6-558 |
| Cow position: | chr17:1284079-1284636 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 140 |
| Conread position: | 7-451 |
| Cow position: | chr17:6002335-6002783 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 26, 203 |
| Conread position: | 7-556 |
| Cow position: | chr17:16889802-16889276 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 66 |
| Conread position: | 7-593 |
| Cow position: | chr17:181284-180672 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 218 |
| Conread position: | 9-451 |
| Cow position: | chr17:19609221-19609659 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 305 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 31, 103 |
| Conread position: | 10-246 |
| Cow position: | chr17:4295052-4294812 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 34, 199 |
| Conread position: | 31-440 |
| Cow position: | chr17:2287024-2286618 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 171 |
| Conread position: | 31-558 |
| Cow position: | chr17:55035-55546 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 42-286 |
| Cow position: | chr17:6119786-6119528 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 62, 244 |
| Conread position: | 42-335 |
| Cow position: | chr17:22131577-22131293 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 65, 161 |
| Conread position: | 43-440 |
| Cow position: | chr17:18302139-18302536 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 43-444 |
| Cow position: | chr17:20401316-20400914 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 296 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 56-587 |
| Cow position: | chr17:15143749-15144315 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 372 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 91, 48 |
| Conread position: | 57-553 |
| Cow position: | chr17:1945798-1945310 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 160 |
| Conread position: | 62-555 |
| Cow position: | chr17:18186612-18187085 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 83-449 |
| Cow position: | chr17:2587911-2587543 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 98-193 |
| Cow position: | chr17:455089-455185 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 151-593 |
| Cow position: | chr17:11782849-11782410 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 161, 34 |
| Conread position: | 170-476 |
| Cow position: | chr17:24780528-24780211 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 185-449 |
| Cow position: | chr17:15417330-15417069 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 133, 25 |
| Conread position: | 188-422 |
| Cow position: | chr17:3694190-3694430 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 190-448 |
| Cow position: | chr17:23843424-23843161 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 217-593 |
| Cow position: | chr17:14217598-14217987 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 7, 157 |
| Conread position: | 220-558 |
| Cow position: | chr17:455402-455742 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 154 |
| Conread position: | 229-593 |
| Cow position: | chr17:9654037-9654414 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 237-550 |
| Cow position: | chr17:25736886-25736580 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 33 |
| Conread position: | 256-583 |
| Cow position: | chr17:43987901-43987572 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 66, 106 |
| Conread position: | 260-586 |
| Cow position: | chr17:1775128-1775456 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 267-587 |
| Cow position: | chr17:6119521-6119195 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 47, 100 |
| Conread position: | 271-447 |
| Cow position: | chr17:20666354-20666532 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 279-556 |
| Cow position: | chr17:20088482-20088755 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 322-440 |
| Cow position: | chr17:20073215-20073333 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.