Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-173 |
| Cow position: | chr18:19539984-19540164 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 130 |
| Conread position: | 1-185 |
| Cow position: | chr18:27986919-27986722 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 1-192 |
| Cow position: | chr18:32651888-32651682 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-193 |
| Cow position: | chr18:17992671-17992876 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1-193 |
| Cow position: | chr18:47719674-47719884 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-197 |
| Cow position: | chr18:2019795-2019999 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 1-198 |
| Cow position: | chr18:40478274-40478065 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-205 |
| Cow position: | chr18:22602378-22602157 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-230 |
| Cow position: | chr18:54171952-54172200 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 173 |
| Conread position: | 1-275 |
| Cow position: | chr18:37585772-37586068 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-275 |
| Cow position: | chr18:44621650-44621353 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 293 |
| Conread position: | 1-277 |
| Cow position: | chr18:51660308-51660020 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 1-286 |
| Cow position: | chr18:16078594-16078290 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 34, 290 |
| Conread position: | 1-286 |
| Cow position: | chr18:19352277-19351962 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 300 |
| Conread position: | 1-286 |
| Cow position: | chr18:47741909-47741603 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 292 |
| Conread position: | 1-286 |
| Cow position: | chr18:55089034-55089339 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 272 |
| Conread position: | 1-348 |
| Cow position: | chr18:51310473-51310143 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 1-401 |
| Cow position: | chr18:14130185-14129770 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 163 |
| Conread position: | 1-402 |
| Cow position: | chr18:23944480-23944876 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 206 |
| Conread position: | 1-403 |
| Cow position: | chr18:48221768-48221373 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 78 |
| Conread position: | 1-444 |
| Cow position: | chr18:45958586-45958133 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 90 |
| Conread position: | 1-445 |
| Cow position: | chr18:54024464-54024935 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 81 |
| Conread position: | 1-464 |
| Cow position: | chr18:25349930-25349452 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 246 |
| Conread position: | 1-489 |
| Cow position: | chr18:16176715-16177234 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 289 |
| Conread position: | 1-489 |
| Cow position: | chr18:27838412-27838918 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 171 |
| Conread position: | 1-538 |
| Cow position: | chr18:28974012-28974557 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 1-538 |
| Cow position: | chr18:36508224-36507666 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-538 |
| Cow position: | chr18:37504953-37504405 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 17 |
| Conread position: | 1-538 |
| Cow position: | chr18:41840934-41841490 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-539 |
| Cow position: | chr18:23797542-23796989 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 276 |
| Conread position: | 1-554 |
| Cow position: | chr18:33358758-33358200 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 1-554 |
| Cow position: | chr18:43147033-43147590 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 207 |
| Conread position: | 1-556 |
| Cow position: | chr18:33268732-33268207 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 1-557 |
| Cow position: | chr18:1521020-1520474 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 198 |
| Conread position: | 1-558 |
| Cow position: | chr18:35335380-35334814 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 221 |
| Conread position: | 1-558 |
| Cow position: | chr18:39748473-39747921 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 174 |
| Conread position: | 1-559 |
| Cow position: | chr18:51257874-51257326 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 195 |
| Conread position: | 1-593 |
| Cow position: | chr18:11275209-11275831 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 2-275 |
| Cow position: | chr18:33953678-33953975 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 2-372 |
| Cow position: | chr18:51480730-51480343 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 246 |
| Conread position: | 2-530 |
| Cow position: | chr18:16660114-16660666 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 388 |
| Conread position: | 13-275 |
| Cow position: | chr18:23746100-23746377 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 28-213 |
| Cow position: | chr18:14415837-14415641 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 31-440 |
| Cow position: | chr18:32293630-32293227 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 168 |
| Conread position: | 42-438 |
| Cow position: | chr18:33335714-33335304 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 141 |
| Conread position: | 43-267 |
| Cow position: | chr18:54002337-54002106 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 49, 94 |
| Conread position: | 43-343 |
| Cow position: | chr18:42244713-42245013 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 55-591 |
| Cow position: | chr18:29236609-29236048 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 333 |
| Conread position: | 80-552 |
| Cow position: | chr18:53785279-53784829 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 90-425 |
| Cow position: | chr18:6869632-6869946 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 224, 88 |
| Conread position: | 106-193 |
| Cow position: | chr18:54044986-54044898 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 106-443 |
| Cow position: | chr18:43200567-43200226 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 146 |
| Conread position: | 170-593 |
| Cow position: | chr18:16078391-16077954 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 174-444 |
| Cow position: | chr18:27986625-27986353 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 176-449 |
| Cow position: | chr18:16876946-16876688 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 186-559 |
| Cow position: | chr18:32651641-32651268 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 186-559 |
| Cow position: | chr18:40477835-40477463 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 190-440 |
| Cow position: | chr18:30198369-30198109 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 33, 160 |
| Conread position: | 219-440 |
| Cow position: | chr18:17993083-17993306 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 52, 96 |
| Conread position: | 224-593 |
| Cow position: | chr18:55089298-55089678 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 148 |
| Conread position: | 226-518 |
| Cow position: | chr18:54172420-54172715 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 44, 147 |
| Conread position: | 235-558 |
| Cow position: | chr18:2020245-2020571 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 35, 111 |
| Conread position: | 259-593 |
| Cow position: | chr18:19351963-19351628 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 109 |
| Conread position: | 270-593 |
| Cow position: | chr18:54002075-54001746 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 271-593 |
| Cow position: | chr18:33953996-33954325 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 93 |
| Conread position: | 271-593 |
| Cow position: | chr18:44621332-44621005 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 271-593 |
| Cow position: | chr18:51660001-51659672 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 293-446 |
| Cow position: | chr18:2887426-2887578 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 29, 74 |
| Conread position: | 300-556 |
| Cow position: | chr18:54044987-54045243 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 12, 42 |
Show alignments to all cow chromosomes.