Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-211 |
| Cow position: | chr20:5560863-5561090 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-215 |
| Cow position: | chr20:10846226-10846454 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 159 |
| Conread position: | 1-428 |
| Cow position: | chr20:37579310-37578863 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 157 |
| Conread position: | 1-442 |
| Cow position: | chr20:30684191-30683734 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 275 |
| Conread position: | 1-444 |
| Cow position: | chr20:28593595-28593130 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 152 |
| Conread position: | 1-449 |
| Cow position: | chr20:7116618-7117085 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-449 |
| Cow position: | chr20:22717839-22718271 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 110 |
| Conread position: | 1-456 |
| Cow position: | chr20:12438909-12439368 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 230 |
| Conread position: | 1-461 |
| Cow position: | chr20:5534791-5534319 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 266 |
| Conread position: | 1-504 |
| Cow position: | chr20:23469807-23470335 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 276 |
| Conread position: | 1-541 |
| Cow position: | chr20:13762758-13762206 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 271 |
| Conread position: | 1-556 |
| Cow position: | chr20:24614402-24613874 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 156 |
| Conread position: | 1-558 |
| Cow position: | chr20:3252281-3252848 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 214 |
| Conread position: | 1-558 |
| Cow position: | chr20:5484042-5483503 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 87 |
| Conread position: | 1-558 |
| Cow position: | chr20:8313580-8314134 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 148 |
| Conread position: | 1-559 |
| Cow position: | chr20:21914178-21913612 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 140 |
| Conread position: | 1-559 |
| Cow position: | chr20:27869049-27868475 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 168 |
| Conread position: | 1-590 |
| Cow position: | chr20:18315727-18316335 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 239 |
| Conread position: | 1-591 |
| Cow position: | chr20:10102693-10103286 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 185 |
| Conread position: | 1-593 |
| Cow position: | chr20:19437810-19437178 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 2-193 |
| Cow position: | chr20:28565749-28565954 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 2-539 |
| Cow position: | chr20:25851139-25851691 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 283 |
| Conread position: | 2-559 |
| Cow position: | chr20:23798733-23798153 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 287 |
| Conread position: | 4-193 |
| Cow position: | chr20:3032784-3032584 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 4-556 |
| Cow position: | chr20:4799796-4800331 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 145 |
| Conread position: | 4-595 |
| Cow position: | chr20:21393421-21392815 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 8-593 |
| Cow position: | chr20:822596-821990 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 390 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 15, 84 |
| Conread position: | 10-427 |
| Cow position: | chr20:5575522-5575114 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 34, 112 |
| Conread position: | 10-444 |
| Cow position: | chr20:8004670-8005118 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 259 |
| Conread position: | 28-591 |
| Cow position: | chr20:11276474-11277043 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 121 |
| Conread position: | 30-194 |
| Cow position: | chr20:3270535-3270368 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 41-239 |
| Cow position: | chr20:15098065-15098272 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 42-275 |
| Cow position: | chr20:29947990-29947742 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 241 |
| Conread position: | 42-275 |
| Cow position: | chr20:31124210-31123962 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 244 |
| Conread position: | 42-449 |
| Cow position: | chr20:28160585-28160154 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 193 |
| Conread position: | 42-590 |
| Cow position: | chr20:15064573-15063993 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 363 |
| Conread position: | 43-588 |
| Cow position: | chr20:13681288-13681833 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 56 |
| Conread position: | 51-554 |
| Cow position: | chr20:15291843-15291340 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 218 |
| Conread position: | 61-441 |
| Cow position: | chr20:35119032-35118648 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 77 |
| Conread position: | 76-556 |
| Cow position: | chr20:19005859-19006322 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 108 |
| Conread position: | 91-444 |
| Cow position: | chr20:2676869-2676525 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 89, 195 |
| Conread position: | 174-449 |
| Cow position: | chr20:9954581-9954866 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 186-443 |
| Cow position: | chr20:28566052-28566309 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 197-591 |
| Cow position: | chr20:10846655-10847048 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 148 |
| Conread position: | 229-451 |
| Cow position: | chr20:15135398-15135182 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 278-554 |
| Cow position: | chr20:3032548-3032277 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 34, 93 |
| Conread position: | 294-593 |
| Cow position: | chr20:1058181-1058486 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 20, 74 |
Show alignments to all cow chromosomes.