Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-183 |
| Cow position: | chr21:30561773-30561578 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-275 |
| Cow position: | chr21:2476539-2476832 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 184 |
| Conread position: | 1-275 |
| Cow position: | chr21:4090622-4090324 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 294 |
| Conread position: | 1-275 |
| Cow position: | chr21:26638492-26638781 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 1-275 |
| Cow position: | chr21:28529573-28529867 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 23 |
| Conread position: | 1-275 |
| Cow position: | chr21:46915558-46915267 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 287 |
| Conread position: | 1-286 |
| Cow position: | chr21:39425034-39424734 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 1-447 |
| Cow position: | chr21:25992649-25993084 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 1-449 |
| Cow position: | chr21:3778739-3778281 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 164 |
| Conread position: | 1-478 |
| Cow position: | chr21:3615263-3614799 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 1-489 |
| Cow position: | chr21:10850051-10849541 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 275 |
| Conread position: | 1-504 |
| Cow position: | chr21:33251363-33250842 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 247 |
| Conread position: | 1-538 |
| Cow position: | chr21:10566646-10566091 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 1-539 |
| Cow position: | chr21:1191013-1190459 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 275 |
| Conread position: | 1-539 |
| Cow position: | chr21:40271849-40272396 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 1-554 |
| Cow position: | chr21:13124024-13124568 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 151 |
| Conread position: | 1-556 |
| Cow position: | chr21:2716710-2717256 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 1-556 |
| Cow position: | chr21:4076820-4076272 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 210 |
| Conread position: | 1-556 |
| Cow position: | chr21:35596339-35595791 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 1-557 |
| Cow position: | chr21:2530155-2530705 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 205 |
| Conread position: | 1-557 |
| Cow position: | chr21:4222716-4223265 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 157 |
| Conread position: | 1-558 |
| Cow position: | chr21:3426460-3425916 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 180 |
| Conread position: | 1-559 |
| Cow position: | chr21:31559684-31560252 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 104 |
| Conread position: | 1-588 |
| Cow position: | chr21:2416211-2415594 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 1-593 |
| Cow position: | chr21:27708733-27708087 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 425 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 34, 356 |
| Conread position: | 1-593 |
| Cow position: | chr21:37044884-37044250 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 413 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 82 |
| Conread position: | 2-413 |
| Cow position: | chr21:2769492-2769915 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 2-464 |
| Cow position: | chr21:145889-145414 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 273 |
| Conread position: | 2-559 |
| Cow position: | chr21:48116078-48115506 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 275 |
| Conread position: | 2-593 |
| Cow position: | chr21:11505556-11504915 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 419 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 2-593 |
| Cow position: | chr21:12056027-12056654 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 401 |
| Conread position: | 3-250 |
| Cow position: | chr21:23860752-23860481 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 3-593 |
| Cow position: | chr21:5016059-5016700 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 409 |
| Conread position: | 4-203 |
| Cow position: | chr21:34292987-34292774 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 4-428 |
| Cow position: | chr21:1292203-1292653 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 164 |
| Conread position: | 4-449 |
| Cow position: | chr21:20744781-20745221 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 304 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 6-261 |
| Cow position: | chr21:2789025-2789293 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 59 |
| Conread position: | 27-558 |
| Cow position: | chr21:4590027-4590572 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 64 |
| Conread position: | 31-197 |
| Cow position: | chr21:2674702-2674876 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 31-399 |
| Cow position: | chr21:2501873-2501493 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 227 |
| Conread position: | 31-548 |
| Cow position: | chr21:7267601-7268129 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 31-559 |
| Cow position: | chr21:2883799-2884342 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 253 |
| Conread position: | 33-198 |
| Cow position: | chr21:9891544-9891373 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 10, 100 |
| Conread position: | 38-554 |
| Cow position: | chr21:47939405-47938893 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 42-219 |
| Cow position: | chr21:30599992-30600177 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 47, 96 |
| Conread position: | 42-275 |
| Cow position: | chr21:26819091-26819338 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 64, 243 |
| Conread position: | 42-296 |
| Cow position: | chr21:11453730-11453999 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 42-449 |
| Cow position: | chr21:358939-358531 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 42-557 |
| Cow position: | chr21:34259289-34259803 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 158 |
| Conread position: | 42-591 |
| Cow position: | chr21:4183461-4182899 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 197 |
| Conread position: | 42-593 |
| Cow position: | chr21:2510578-2509984 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 126 |
| Conread position: | 43-397 |
| Cow position: | chr21:47948031-47947681 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 136, 36 |
| Conread position: | 45-275 |
| Cow position: | chr21:39580642-39580397 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 47, 241 |
| Conread position: | 59-213 |
| Cow position: | chr21:23811816-23811655 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 117 |
| Conread position: | 63-562 |
| Cow position: | chr21:29086390-29085906 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 106 |
| Conread position: | 71-286 |
| Cow position: | chr21:19610010-19609781 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 215 |
| Conread position: | 75-390 |
| Cow position: | chr21:41953073-41952744 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 159 |
| Conread position: | 89-449 |
| Cow position: | chr21:35089573-35089202 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 91, 262 |
| Conread position: | 113-464 |
| Cow position: | chr21:2542026-2542387 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 129 |
| Conread position: | 144-440 |
| Cow position: | chr21:3798286-3798555 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 170-593 |
| Cow position: | chr21:19609884-19609442 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 210 |
| Conread position: | 198-548 |
| Cow position: | chr21:4455848-4455505 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 202-559 |
| Cow position: | chr21:30561017-30560661 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 225-447 |
| Cow position: | chr21:47947817-47947594 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 236-558 |
| Cow position: | chr21:34292533-34292212 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 131 |
| Conread position: | 250-591 |
| Cow position: | chr21:23809480-23809119 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 269-446 |
| Cow position: | chr21:18820415-18820594 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 271-583 |
| Cow position: | chr21:2476853-2477172 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 271-593 |
| Cow position: | chr21:2454373-2454047 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 271-593 |
| Cow position: | chr21:28529888-28530216 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 271-593 |
| Cow position: | chr21:46915246-46914917 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 439-589 |
| Cow position: | chr21:28873965-28873813 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 71, 45 |
| Conread position: | 455-600 |
| Cow position: | chr21:358372-358225 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 25 |
Show alignments to all cow chromosomes.