Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-194 |
| Cow position: | chr24:36560199-36560394 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 80 |
| Conread position: | 1-201 |
| Cow position: | chr24:12485433-12485650 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-268 |
| Cow position: | chr24:6025211-6025502 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-268 |
| Cow position: | chr24:7060986-7060706 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 201 |
| Conread position: | 1-275 |
| Cow position: | chr24:6434125-6433826 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 295 |
| Conread position: | 1-275 |
| Cow position: | chr24:20268102-20267806 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-275 |
| Cow position: | chr24:44017430-44017134 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-285 |
| Cow position: | chr24:9188847-9189151 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 291 |
| Conread position: | 1-286 |
| Cow position: | chr24:6083901-6083595 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-429 |
| Cow position: | chr24:6057555-6057120 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 297 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 35, 106 |
| Conread position: | 1-430 |
| Cow position: | chr24:6352080-6351635 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 43, 253 |
| Conread position: | 1-440 |
| Cow position: | chr24:32331225-32330774 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 304 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 35, 241 |
| Conread position: | 1-441 |
| Cow position: | chr24:4415639-4416097 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 291 |
| Conread position: | 1-444 |
| Cow position: | chr24:12131603-12132057 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 80, 287 |
| Conread position: | 1-451 |
| Cow position: | chr24:12161763-12161303 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 283 |
| Conread position: | 1-501 |
| Cow position: | chr24:33933252-33932706 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 399 |
| Conread position: | 1-542 |
| Cow position: | chr24:12797876-12798436 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 1-556 |
| Cow position: | chr24:37301193-37301735 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 193 |
| Conread position: | 1-558 |
| Cow position: | chr24:17187430-17186885 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 206 |
| Conread position: | 1-559 |
| Cow position: | chr24:19833265-19832693 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 1-593 |
| Cow position: | chr24:13021556-13020943 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 260 |
| Conread position: | 1-593 |
| Cow position: | chr24:33739460-33740103 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 422 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 52, 611 |
| Conread position: | 2-210 |
| Cow position: | chr24:13188071-13187853 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 42, 109 |
| Conread position: | 2-248 |
| Cow position: | chr24:12208023-12207766 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 2-275 |
| Cow position: | chr24:22793060-22792764 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 35, 292 |
| Conread position: | 2-443 |
| Cow position: | chr24:12288839-12289296 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 152 |
| Conread position: | 2-451 |
| Cow position: | chr24:14282720-14283161 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 2-578 |
| Cow position: | chr24:14384728-14385323 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 126 |
| Conread position: | 2-593 |
| Cow position: | chr24:6645301-6644657 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 417 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 4-280 |
| Cow position: | chr24:30117370-30117095 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 4-438 |
| Cow position: | chr24:15392422-15392879 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 4-443 |
| Cow position: | chr24:12086081-12085648 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 257 |
| Conread position: | 4-530 |
| Cow position: | chr24:14390838-14391386 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 386 |
| Conread position: | 6-449 |
| Cow position: | chr24:32125628-32126065 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 126 |
| Conread position: | 6-449 |
| Cow position: | chr24:38635622-38635166 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 287 |
| Conread position: | 6-476 |
| Cow position: | chr24:35838746-35839205 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 326 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 35, 114 |
| Conread position: | 6-600 |
| Cow position: | chr24:16649421-16650044 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 11-296 |
| Cow position: | chr24:12114159-12114468 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 24, 286 |
| Conread position: | 12-275 |
| Cow position: | chr24:5993101-5993382 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 28-595 |
| Cow position: | chr24:6145211-6144630 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 256 |
| Conread position: | 31-558 |
| Cow position: | chr24:13531685-13532200 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 160 |
| Conread position: | 37-430 |
| Cow position: | chr24:6335535-6335126 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 38-449 |
| Cow position: | chr24:35841774-35842170 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 142, 9 |
| Conread position: | 42-253 |
| Cow position: | chr24:35990819-35991038 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 42-265 |
| Cow position: | chr24:13181502-13181734 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 136 |
| Conread position: | 42-558 |
| Cow position: | chr24:12236893-12236358 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 339 |
| Conread position: | 42-559 |
| Cow position: | chr24:29186642-29186112 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 227 |
| Conread position: | 42-593 |
| Cow position: | chr24:7712462-7713051 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 380 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 358 |
| Conread position: | 43-444 |
| Cow position: | chr24:39678267-39677863 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 46 |
| Conread position: | 44-492 |
| Cow position: | chr24:17314479-17314933 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 320 |
| Conread position: | 44-501 |
| Cow position: | chr24:37216561-37216085 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 339 |
| Conread position: | 45-556 |
| Cow position: | chr24:14583930-14583427 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 49-449 |
| Cow position: | chr24:148763-149171 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 66-446 |
| Cow position: | chr24:29372506-29372901 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 90, 23 |
| Conread position: | 75-491 |
| Cow position: | chr24:11156847-11157245 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 25 |
| Conread position: | 80-449 |
| Cow position: | chr24:17303779-17304159 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 89-269 |
| Cow position: | chr24:16084895-16085081 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 92, 66 |
| Conread position: | 145-539 |
| Cow position: | chr24:9544554-9544154 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 179-463 |
| Cow position: | chr24:6357704-6357419 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 193-593 |
| Cow position: | chr24:6433889-6433474 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 229-592 |
| Cow position: | chr24:16085061-16085439 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 10, 68 |
| Conread position: | 229-593 |
| Cow position: | chr24:6025483-6025857 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 229-593 |
| Cow position: | chr24:29306210-29306583 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 236-444 |
| Cow position: | chr24:36707262-36707054 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 84, 102 |
| Conread position: | 246-540 |
| Cow position: | chr24:12208944-12209244 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 21, 61 |
| Conread position: | 254-593 |
| Cow position: | chr24:13187126-13186778 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 117 |
| Conread position: | 264-600 |
| Cow position: | chr24:36560633-36560971 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 104 |
| Conread position: | 271-440 |
| Cow position: | chr24:5993403-5993568 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 271-593 |
| Cow position: | chr24:6083565-6083242 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 84 |
| Conread position: | 279-593 |
| Cow position: | chr24:9189171-9189490 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 313-593 |
| Cow position: | chr24:12114568-12114849 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 131, 51 |
Show alignments to all cow chromosomes.