Cow genome map

Conread name: Lym2-sn39_F12.f

Conread position: 1-191
Cow position: chr28:1815025-1815228 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 28, 0

Conread position: 1-270
Cow position: chr28:15920623-15920908 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 205
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 43, 108

Conread position: 1-275
Cow position: chr28:9155442-9155715 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 43, 162

Conread position: 1-275
Cow position: chr28:13441034-13441330 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 43, 292

Conread position: 1-275
Cow position: chr28:14750391-14750094 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 209
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 293

Conread position: 1-275
Cow position: chr28:15950824-15950528 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 214
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 292

Conread position: 1-377
Cow position: chr28:24587276-24586889 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 139
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 108

Conread position: 1-397
Cow position: chr28:7001831-7001434 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 171

Conread position: 1-401
Cow position: chr28:17388324-17387908 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 275

Conread position: 1-419
Cow position: chr28:26007876-26007445 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 205

Conread position: 1-428
Cow position: chr28:13459814-13459374 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 286

Conread position: 1-440
Cow position: chr28:34648779-34648338 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 25

Conread position: 1-444
Cow position: chr28:18520618-18521083 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 293

Conread position: 1-446
Cow position: chr28:34324671-34324209 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 293
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 42, 121

Conread position: 1-449
Cow position: chr28:2083447-2082984 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 292

Conread position: 1-449
Cow position: chr28:10582142-10582603 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 285

Conread position: 1-449
Cow position: chr28:34593686-34593222 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 275

Conread position: 1-464
Cow position: chr28:3192948-3193412 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 73

Conread position: 1-489
Cow position: chr28:782241-781727 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 276

Conread position: 1-489
Cow position: chr28:1168321-1168831 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 275

Conread position: 1-502
Cow position: chr28:5796658-5796142 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 381

Conread position: 1-530
Cow position: chr28:5565704-5565157 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 289

Conread position: 1-539
Cow position: chr28:17667669-17668226 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 299

Conread position: 1-539
Cow position: chr28:26426431-26426970 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 163

Conread position: 1-539
Cow position: chr28:29819413-29818858 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 274

Conread position: 1-539
Cow position: chr28:32792536-32793086 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 276

Conread position: 1-541
Cow position: chr28:13522570-13522021 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 269

Conread position: 1-550
Cow position: chr28:12150162-12149603 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 17

Conread position: 1-556
Cow position: chr28:15681736-15681189 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 211

Conread position: 1-559
Cow position: chr28:8378407-8377826 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 17

Conread position: 1-591
Cow position: chr28:21325631-21325021 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 25

Conread position: 2-201
Cow position: chr28:17330679-17330902 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 165
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 38, 219

Conread position: 2-275
Cow position: chr28:1952975-1952690 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 61

Conread position: 2-444
Cow position: chr28:14705830-14706284 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 273

Conread position: 2-452
Cow position: chr28:22827895-22827434 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 94

Conread position: 2-518
Cow position: chr28:7901195-7900691 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 14

Conread position: 3-539
Cow position: chr28:22261310-22261853 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 273

Conread position: 4-552
Cow position: chr28:2591758-2591218 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 12

Conread position: 4-587
Cow position: chr28:21358861-21358252 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 159

Conread position: 5-558
Cow position: chr28:5115242-5115806 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 21

Conread position: 6-591
Cow position: chr28:5812548-5811938 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 206

Conread position: 8-182
Cow position: chr28:7822090-7821914 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 102

Conread position: 10-546
Cow position: chr28:7817066-7816534 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 145

Conread position: 11-434
Cow position: chr28:1387558-1387996 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 266

Conread position: 31-540
Cow position: chr28:9953942-9953444 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 119

Conread position: 31-591
Cow position: chr28:8721635-8722221 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 358

Conread position: 41-590
Cow position: chr28:7790443-7791001 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 80

Conread position: 42-591
Cow position: chr28:10619306-10619871 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 41

Conread position: 42-598
Cow position: chr28:489285-488682 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 391
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 46, 308

Conread position: 52-464
Cow position: chr28:33252129-33251678 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 348

Conread position: 55-206
Cow position: chr28:9137246-9137404 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 55-428
Cow position: chr28:5752378-5752760 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 182

Conread position: 55-537
Cow position: chr28:7740037-7739563 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 342
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 37, 215

Conread position: 55-591
Cow position: chr28:2990184-2990736 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 44

Conread position: 60-529
Cow position: chr28:1504418-1503933 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 209

Conread position: 61-428
Cow position: chr28:15035640-15036016 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 208

Conread position: 65-449
Cow position: chr28:10464077-10464464 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 17, 161

Conread position: 67-427
Cow position: chr28:15378244-15378612 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 24, 159

Conread position: 71-591
Cow position: chr28:24667380-24666842 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 248

Conread position: 79-470
Cow position: chr28:18089253-18089644 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 257
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 10

Conread position: 84-464
Cow position: chr28:28973479-28973857 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 262
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 100, 178

Conread position: 87-427
Cow position: chr28:5936764-5936421 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 248
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 109, 188

Conread position: 168-593
Cow position: chr28:1952773-1952338 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 283
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 11

Conread position: 204-539
Cow position: chr28:5245172-5244839 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 227
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 110, 13

Conread position: 206-554
Cow position: chr28:17331038-17331375 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 241
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 17, 64

Conread position: 219-556
Cow position: chr28:4381771-4382115 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 51

Conread position: 219-556
Cow position: chr28:9137394-9137735 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 236
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 93, 51

Conread position: 271-593
Cow position: chr28:7821014-7820688 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 42, 96

Conread position: 282-593
Cow position: chr28:6780815-6781124 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 157, 40

Conread position: 311-511
Cow position: chr28:9156897-9157098 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 133, 57

Conread position: 470-600
Cow position: chr28:2925276-2925141 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.