Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-198 |
| Cow position: | chr29:7840605-7840396 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-217 |
| Cow position: | chr29:31121614-31121384 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 1-225 |
| Cow position: | chr29:9643911-9644152 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 11, 237 |
| Conread position: | 1-275 |
| Cow position: | chr29:15969339-15969628 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 1-275 |
| Cow position: | chr29:16109538-16109241 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 43, 293 |
| Conread position: | 1-275 |
| Cow position: | chr29:28060857-28061153 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-286 |
| Cow position: | chr29:13578226-13577930 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 1-289 |
| Cow position: | chr29:32315849-32315540 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 156 |
| Conread position: | 1-426 |
| Cow position: | chr29:20250968-20250527 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 275 |
| Conread position: | 1-443 |
| Cow position: | chr29:23975641-23975186 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 132 |
| Conread position: | 1-444 |
| Cow position: | chr29:48667-49125 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 288 |
| Conread position: | 1-449 |
| Cow position: | chr29:30811345-30810906 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 1-449 |
| Cow position: | chr29:39079897-39080363 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-455 |
| Cow position: | chr29:32640592-32640144 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 307 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 1-464 |
| Cow position: | chr29:21246377-21245899 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 274 |
| Conread position: | 1-504 |
| Cow position: | chr29:2841556-2842070 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-504 |
| Cow position: | chr29:34800001-34800503 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 1-530 |
| Cow position: | chr29:19623438-19623985 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 1-530 |
| Cow position: | chr29:43322368-43321813 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 284 |
| Conread position: | 1-538 |
| Cow position: | chr29:16022339-16021784 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 365 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 1-538 |
| Cow position: | chr29:25932735-25933276 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-539 |
| Cow position: | chr29:7431407-7431967 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 275 |
| Conread position: | 1-539 |
| Cow position: | chr29:10648439-10648996 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 375 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 1-539 |
| Cow position: | chr29:38226802-38226242 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 139 |
| Conread position: | 1-540 |
| Cow position: | chr29:45587489-45588047 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 276 |
| Conread position: | 1-550 |
| Cow position: | chr29:19652917-19652349 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 275 |
| Conread position: | 1-558 |
| Cow position: | chr29:16769941-16769401 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 203 |
| Conread position: | 1-559 |
| Cow position: | chr29:45459525-45458956 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 1-565 |
| Cow position: | chr29:35196486-35195937 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 1-593 |
| Cow position: | chr29:27250526-27251169 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 419 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 43, 298 |
| Conread position: | 2-268 |
| Cow position: | chr29:15895040-15895327 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 155 |
| Conread position: | 2-426 |
| Cow position: | chr29:6266686-6267125 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 71 |
| Conread position: | 2-449 |
| Cow position: | chr29:104383-103928 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 100 |
| Conread position: | 2-530 |
| Cow position: | chr29:40503171-40503717 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 274 |
| Conread position: | 2-538 |
| Cow position: | chr29:2689713-2689183 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 2-539 |
| Cow position: | chr29:32539618-32539076 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 271 |
| Conread position: | 2-557 |
| Cow position: | chr29:26165014-26165583 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 131 |
| Conread position: | 2-559 |
| Cow position: | chr29:10824150-10824724 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 161 |
| Conread position: | 2-593 |
| Cow position: | chr29:35296685-35296065 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 167 |
| Conread position: | 3-464 |
| Cow position: | chr29:2099651-2099170 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 122 |
| Conread position: | 3-556 |
| Cow position: | chr29:27040953-27041499 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 175 |
| Conread position: | 3-579 |
| Cow position: | chr29:5957410-5956796 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 389 |
| Conread position: | 4-268 |
| Cow position: | chr29:14368753-14368465 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 4-600 |
| Cow position: | chr29:2750582-2751191 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 6 |
| Conread position: | 6-253 |
| Cow position: | chr29:12796661-12796912 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 6-432 |
| Cow position: | chr29:15950376-15950812 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 232 |
| Conread position: | 6-542 |
| Cow position: | chr29:11049088-11048540 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 203 |
| Conread position: | 27-558 |
| Cow position: | chr29:10848336-10848860 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 31-268 |
| Cow position: | chr29:43366224-43366451 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 46 |
| Conread position: | 42-227 |
| Cow position: | chr29:2468179-2468373 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 42-422 |
| Cow position: | chr29:21543614-21543984 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 155 |
| Conread position: | 43-443 |
| Cow position: | chr29:34751933-34752321 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 47 |
| Conread position: | 65-511 |
| Cow position: | chr29:21431608-21432069 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 292 |
| Conread position: | 89-591 |
| Cow position: | chr29:8663985-8663484 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 156 |
| Conread position: | 103-582 |
| Cow position: | chr29:42650057-42649569 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 182 |
| Conread position: | 103-582 |
| Cow position: | chr29:42801917-42801429 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 182 |
| Conread position: | 118-444 |
| Cow position: | chr29:16109386-16109045 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 159-593 |
| Cow position: | chr29:18857190-18857623 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 153, 26 |
| Conread position: | 174-443 |
| Cow position: | chr29:45464148-45464425 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 202 |
| Conread position: | 190-557 |
| Cow position: | chr29:34622462-34622809 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 124, 29 |
| Conread position: | 224-593 |
| Cow position: | chr29:32315587-32315208 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 7, 151 |
| Conread position: | 227-558 |
| Cow position: | chr29:22318375-22318715 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 147 |
| Conread position: | 229-593 |
| Cow position: | chr29:611075-611439 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 13, 124 |
| Conread position: | 267-593 |
| Cow position: | chr29:19884747-19884416 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 271-593 |
| Cow position: | chr29:13577919-13577593 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 289-592 |
| Cow position: | chr29:670244-670553 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 289-592 |
| Cow position: | chr29:32560580-32560890 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 311-556 |
| Cow position: | chr29:43366706-43366946 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 133, 58 |
| Conread position: | 313-441 |
| Cow position: | chr29:6874380-6874507 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 483-589 |
| Cow position: | chr29:45465052-45465159 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 56 |
Show alignments to all cow chromosomes.