Cow genome map
| Conread name: | Lym2-sn39_F12.f |
| Conread position: | 1-193 |
| Cow position: | chr4:11617976-11617763 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-214 |
| Cow position: | chr4:17926723-17926953 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-268 |
| Cow position: | chr4:528524-528236 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-268 |
| Cow position: | chr4:47764639-47764929 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-275 |
| Cow position: | chr4:23114645-23114940 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 291 |
| Conread position: | 1-275 |
| Cow position: | chr4:65224003-65224299 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-277 |
| Cow position: | chr4:13547559-13547257 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 43, 293 |
| Conread position: | 1-286 |
| Cow position: | chr4:158047-157754 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 1-286 |
| Cow position: | chr4:9311768-9311463 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 43, 291 |
| Conread position: | 1-428 |
| Cow position: | chr4:8598607-8599033 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 305 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 1-428 |
| Cow position: | chr4:46712810-46713244 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 127 |
| Conread position: | 1-438 |
| Cow position: | chr4:31668846-31668418 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 1-440 |
| Cow position: | chr4:1371479-1371908 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 1-441 |
| Cow position: | chr4:4905685-4905231 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 162 |
| Conread position: | 1-444 |
| Cow position: | chr4:60630717-60631163 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 1-444 |
| Cow position: | chr4:60673436-60672980 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 1-449 |
| Cow position: | chr4:21359182-21358736 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 1-464 |
| Cow position: | chr4:44724614-44724137 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 272 |
| Conread position: | 1-504 |
| Cow position: | chr4:48025933-48025410 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 271 |
| Conread position: | 1-530 |
| Cow position: | chr4:355442-354896 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 1-530 |
| Cow position: | chr4:43320105-43320654 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 243 |
| Conread position: | 1-530 |
| Cow position: | chr4:43880640-43880092 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 88 |
| Conread position: | 1-535 |
| Cow position: | chr4:16359422-16358885 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 62 |
| Conread position: | 1-538 |
| Cow position: | chr4:18516427-18515859 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 289 |
| Conread position: | 1-539 |
| Cow position: | chr4:36895905-36895348 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 243 |
| Conread position: | 1-541 |
| Cow position: | chr4:29532183-29532743 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 275 |
| Conread position: | 1-555 |
| Cow position: | chr4:47718078-47718587 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 37 |
| Conread position: | 1-558 |
| Cow position: | chr4:66925535-66924975 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 166 |
| Conread position: | 1-559 |
| Cow position: | chr4:1050089-1050671 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 277 |
| Conread position: | 1-559 |
| Cow position: | chr4:24445668-24446247 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 281 |
| Conread position: | 1-559 |
| Cow position: | chr4:33073853-33074426 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 265 |
| Conread position: | 1-559 |
| Cow position: | chr4:45049764-45050344 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 1-590 |
| Cow position: | chr4:28830571-28829968 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 66 |
| Conread position: | 1-590 |
| Cow position: | chr4:34185328-34185909 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 1-592 |
| Cow position: | chr4:101398-102032 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 411 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 43, 522 |
| Conread position: | 1-592 |
| Cow position: | chr4:6269097-6269733 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 110 |
| Conread position: | 1-593 |
| Cow position: | chr4:1931089-1931707 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 292 |
| Conread position: | 1-593 |
| Cow position: | chr4:3125312-3124695 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 398 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 43, 338 |
| Conread position: | 1-593 |
| Cow position: | chr4:30307923-30308549 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 2-504 |
| Cow position: | chr4:6490816-6491340 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 288 |
| Conread position: | 2-538 |
| Cow position: | chr4:25600082-25600626 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 2-539 |
| Cow position: | chr4:33493342-33492782 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 275 |
| Conread position: | 2-541 |
| Cow position: | chr4:13492106-13491546 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 255 |
| Conread position: | 2-550 |
| Cow position: | chr4:41330970-41330408 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 274 |
| Conread position: | 4-223 |
| Cow position: | chr4:54190389-54190168 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 4-275 |
| Cow position: | chr4:5879705-5879421 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 4-539 |
| Cow position: | chr4:3961126-3960572 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 286 |
| Conread position: | 4-591 |
| Cow position: | chr4:21338458-21339060 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 178 |
| Conread position: | 5-290 |
| Cow position: | chr4:1464393-1464696 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 32, 133 |
| Conread position: | 6-600 |
| Cow position: | chr4:46663730-46663113 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 163 |
| Conread position: | 8-428 |
| Cow position: | chr4:58883150-58883578 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 20, 157 |
| Conread position: | 8-440 |
| Cow position: | chr4:22471721-22471305 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 104 |
| Conread position: | 11-449 |
| Cow position: | chr4:41118650-41118192 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 235 |
| Conread position: | 31-511 |
| Cow position: | chr4:57978912-57978425 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 196 |
| Conread position: | 42-177 |
| Cow position: | chr4:60265308-60265445 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 42-285 |
| Cow position: | chr4:602480-602223 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 244 |
| Conread position: | 42-436 |
| Cow position: | chr4:3358208-3357809 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 196 |
| Conread position: | 42-587 |
| Cow position: | chr4:41954277-41953699 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 353 |
| Conread position: | 46-447 |
| Cow position: | chr4:51044407-51044813 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 47-428 |
| Cow position: | chr4:30283173-30282786 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 175 |
| Conread position: | 66-444 |
| Cow position: | chr4:54955432-54955029 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 33, 332 |
| Conread position: | 68-398 |
| Cow position: | chr4:10408187-10407878 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 217-592 |
| Cow position: | chr4:4168787-4168423 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 153 |
| Conread position: | 229-592 |
| Cow position: | chr4:47764910-47765284 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 229-593 |
| Cow position: | chr4:528255-527882 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 10, 142 |
| Conread position: | 263-593 |
| Cow position: | chr4:602217-601886 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 271-544 |
| Cow position: | chr4:6566434-6566155 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 92 |
| Conread position: | 271-593 |
| Cow position: | chr4:16055808-16055478 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 107 |
| Conread position: | 271-593 |
| Cow position: | chr4:32211344-32211016 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 271-600 |
| Cow position: | chr4:9311452-9311115 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 35, 97 |
| Conread position: | 361-593 |
| Cow position: | chr4:5879087-5878851 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.