Cow genome map
| Conread name: | Lym2-sn47_E05.f |
| Conread position: | 10-651 |
| Cow position: | chr10:48397893-48397260 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 142 |
| Conread position: | 11-376 |
| Cow position: | chr10:126495-126864 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 55 |
| Conread position: | 11-651 |
| Cow position: | chr10:39778908-39778274 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 108 |
| Conread position: | 14-478 |
| Cow position: | chr10:57502020-57502484 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 133 |
| Conread position: | 14-499 |
| Cow position: | chr10:20382799-20382329 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 26 |
| Conread position: | 15-259 |
| Cow position: | chr10:27664055-27663808 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 16-295 |
| Cow position: | chr10:1665319-1665038 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 260 |
| Conread position: | 16-313 |
| Cow position: | chr10:51773993-51773702 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 103 |
| Conread position: | 16-357 |
| Cow position: | chr10:11684419-11684070 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 217 |
| Conread position: | 16-385 |
| Cow position: | chr10:40398211-40398576 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 103 |
| Conread position: | 16-394 |
| Cow position: | chr10:32429943-32430310 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 280, 101 |
| Conread position: | 16-400 |
| Cow position: | chr10:20375620-20375243 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 147 |
| Conread position: | 16-400 |
| Cow position: | chr10:21399466-21399081 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 97 |
| Conread position: | 16-400 |
| Cow position: | chr10:28642749-28643142 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 383 |
| Conread position: | 16-430 |
| Cow position: | chr10:42641805-42642206 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 246, 99 |
| Conread position: | 16-463 |
| Cow position: | chr10:55285174-55285612 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 216 |
| Conread position: | 16-497 |
| Cow position: | chr10:24976562-24976104 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 319 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 230, 78 |
| Conread position: | 16-519 |
| Cow position: | chr10:32558561-32559072 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 14 |
| Conread position: | 16-558 |
| Cow position: | chr10:10583329-10583886 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 496 |
| Conread position: | 16-594 |
| Cow position: | chr10:2119801-2119210 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 267 |
| Conread position: | 16-606 |
| Cow position: | chr10:47908146-47908740 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 369 |
| Conread position: | 16-630 |
| Cow position: | chr10:28946697-28947295 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 49 |
| Conread position: | 16-639 |
| Cow position: | chr10:51782198-51781596 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 46 |
| Conread position: | 16-641 |
| Cow position: | chr10:57988781-57988147 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 10 |
| Conread position: | 16-643 |
| Cow position: | chr10:29011440-29010820 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 132 |
| Conread position: | 16-651 |
| Cow position: | chr10:1378718-1379354 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 51 |
| Conread position: | 16-651 |
| Cow position: | chr10:7897270-7896623 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 381 |
| Conread position: | 16-651 |
| Cow position: | chr10:14805058-14805701 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 557 |
| Conread position: | 16-651 |
| Cow position: | chr10:19840895-19841537 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 110 |
| Conread position: | 16-651 |
| Cow position: | chr10:29845432-29844800 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 16-651 |
| Cow position: | chr10:31524981-31525586 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 144 |
| Conread position: | 16-651 |
| Cow position: | chr10:39040083-39039458 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 101 |
| Conread position: | 16-651 |
| Cow position: | chr10:39815186-39814541 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 476 |
| Conread position: | 16-651 |
| Cow position: | chr10:41158659-41159271 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 101 |
| Conread position: | 16-651 |
| Cow position: | chr10:41568313-41568959 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-651 |
| Cow position: | chr10:55094483-55095122 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 56 |
| Conread position: | 16-651 |
| Cow position: | chr10:57556123-57555477 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 380 |
| Conread position: | 17-651 |
| Cow position: | chr10:41878136-41878782 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 18-179 |
| Cow position: | chr10:33870299-33870462 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 144 |
| Conread position: | 18-651 |
| Cow position: | chr10:21739533-21738898 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 208 |
| Conread position: | 18-651 |
| Cow position: | chr10:40641177-40641799 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 30 |
| Conread position: | 19-225 |
| Cow position: | chr10:279392-279185 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 97, 191 |
| Conread position: | 19-293 |
| Cow position: | chr10:38544710-38544444 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 19-503 |
| Cow position: | chr10:39181011-39181506 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 377 |
| Conread position: | 19-619 |
| Cow position: | chr10:21488181-21488782 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 89 |
| Conread position: | 19-622 |
| Cow position: | chr10:7280887-7280276 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 129 |
| Conread position: | 19-626 |
| Cow position: | chr10:16820064-16819415 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 411 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 73, 48 |
| Conread position: | 19-651 |
| Cow position: | chr10:28256201-28255550 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 20-387 |
| Cow position: | chr10:50135789-50136154 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 129 |
| Conread position: | 23-321 |
| Cow position: | chr10:64146148-64146447 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 210 |
| Conread position: | 23-412 |
| Cow position: | chr10:29109923-29109542 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 265, 91 |
| Conread position: | 24-385 |
| Cow position: | chr10:9945064-9944712 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 69 |
| Conread position: | 25-348 |
| Cow position: | chr10:40151031-40150720 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 92 |
| Conread position: | 25-648 |
| Cow position: | chr10:14334624-14333991 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 388 |
| Conread position: | 25-649 |
| Cow position: | chr10:22102458-22103088 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 266 |
| Conread position: | 25-651 |
| Cow position: | chr10:19495067-19494431 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 603 |
| Conread position: | 26-651 |
| Cow position: | chr10:29101495-29100867 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 26-651 |
| Cow position: | chr10:29631576-29630937 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 27-650 |
| Cow position: | chr10:17433580-17434209 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 200 |
| Conread position: | 27-651 |
| Cow position: | chr10:38849513-38850124 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 116 |
| Conread position: | 32-651 |
| Cow position: | chr10:33870513-33871148 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 45-546 |
| Cow position: | chr10:47787930-47788427 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 55 |
| Conread position: | 53-651 |
| Cow position: | chr10:55024842-55025434 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 145 |
| Conread position: | 58-500 |
| Cow position: | chr10:24102282-24101846 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 68, 88 |
| Conread position: | 64-552 |
| Cow position: | chr10:21078885-21079371 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 322 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 65-358 |
| Cow position: | chr10:14862931-14863215 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 70-648 |
| Cow position: | chr10:29109702-29109130 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 53 |
| Conread position: | 86-651 |
| Cow position: | chr10:25652147-25651571 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 311 |
| Conread position: | 94-648 |
| Cow position: | chr10:68160346-68159785 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 153 |
| Conread position: | 106-651 |
| Cow position: | chr10:10172039-10172593 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 272 |
| Conread position: | 152-648 |
| Cow position: | chr10:8291399-8291895 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 172-651 |
| Cow position: | chr10:39439526-39440009 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 20 |
| Conread position: | 173-361 |
| Cow position: | chr10:38535585-38535414 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 177, 46 |
| Conread position: | 174-649 |
| Cow position: | chr10:58376924-58376444 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 41 |
| Conread position: | 177-568 |
| Cow position: | chr10:20537752-20538125 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 215-651 |
| Cow position: | chr10:16927076-16927528 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 229-387 |
| Cow position: | chr10:32828126-32828291 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 33 |
| Conread position: | 244-400 |
| Cow position: | chr10:36512025-36512182 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 119 |
| Conread position: | 272-471 |
| Cow position: | chr10:5256594-5256387 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 288-651 |
| Cow position: | chr10:8325615-8325255 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 104 |
| Conread position: | 291-650 |
| Cow position: | chr10:22644492-22644855 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 149 |
| Conread position: | 294-651 |
| Cow position: | chr10:23409749-23409392 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 344-651 |
| Cow position: | chr10:40150640-40150340 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 21, 93 |
| Conread position: | 364-651 |
| Cow position: | chr10:29732308-29732597 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 154 |
| Conread position: | 428-651 |
| Cow position: | chr10:48375817-48375595 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 455-651 |
| Cow position: | chr10:17957933-17957737 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.