Cow genome map

Conread name: Lym2-sn47_E05.f

Conread position: 9-651
Cow position: chr11:28228920-28228271 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 192

Conread position: 16-153
Cow position: chr11:15985675-15985815 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 100, 0

Conread position: 16-191
Cow position: chr11:37476129-37475951 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 100, 0

Conread position: 16-326
Cow position: chr11:52314692-52314388 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 216
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 42, 136

Conread position: 16-361
Cow position: chr11:28108990-28109338 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 161
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 100, 0

Conread position: 16-387
Cow position: chr11:21898990-21898629 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 82

Conread position: 16-399
Cow position: chr11:44156396-44156018 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 10

Conread position: 16-424
Cow position: chr11:44252650-44253074 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 260

Conread position: 16-552
Cow position: chr11:3856074-3856600 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 29

Conread position: 16-558
Cow position: chr11:71330448-71331004 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 16-560
Cow position: chr11:11988985-11989536 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 304

Conread position: 16-579
Cow position: chr11:10848303-10848876 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 91

Conread position: 16-606
Cow position: chr11:57627200-57626600 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 565

Conread position: 16-609
Cow position: chr11:41169841-41169237 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 123

Conread position: 16-620
Cow position: chr11:42339440-42338843 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 371
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 226, 102

Conread position: 16-631
Cow position: chr11:40775146-40774550 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 10

Conread position: 16-636
Cow position: chr11:26124076-26123436 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 10

Conread position: 16-639
Cow position: chr11:17106830-17106197 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 381

Conread position: 16-651
Cow position: chr11:9733825-9733185 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 309

Conread position: 16-651
Cow position: chr11:17547015-17547655 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 315

Conread position: 16-651
Cow position: chr11:19063219-19062579 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 17

Conread position: 16-651
Cow position: chr11:30253086-30253721 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 10

Conread position: 16-651
Cow position: chr11:43513778-43513132 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 67

Conread position: 16-651
Cow position: chr11:44518012-44517368 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 16-651
Cow position: chr11:61400225-61399607 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 127

Conread position: 16-651
Cow position: chr11:67845718-67845074 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 309

Conread position: 16-651
Cow position: chr11:72310181-72309542 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 144

Conread position: 16-651
Cow position: chr11:73134142-73134794 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 426

Conread position: 16-651
Cow position: chr11:75554146-75553518 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 136

Conread position: 16-651
Cow position: chr11:76373134-76372539 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 8

Conread position: 17-651
Cow position: chr11:53286314-53285679 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 236

Conread position: 18-134
Cow position: chr11:44490764-44490649 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 97, 0

Conread position: 18-321
Cow position: chr11:33977601-33977295 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 100, 223

Conread position: 18-449
Cow position: chr11:29613139-29612699 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 113

Conread position: 18-607
Cow position: chr11:50026893-50026294 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 167

Conread position: 18-651
Cow position: chr11:1489296-1488680 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 45

Conread position: 18-651
Cow position: chr11:3493843-3494487 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 18-651
Cow position: chr11:32452682-32453329 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 18-651
Cow position: chr11:87142436-87143079 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 23

Conread position: 19-160
Cow position: chr11:31861757-31861900 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 99, 141

Conread position: 19-651
Cow position: chr11:20733383-20732736 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 19-651
Cow position: chr11:63654478-63653837 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 89

Conread position: 19-651
Cow position: chr11:85392970-85392336 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 120

Conread position: 21-631
Cow position: chr11:52420261-52420873 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 150

Conread position: 23-650
Cow position: chr11:64355682-64356292 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 129

Conread position: 24-481
Cow position: chr11:1495170-1494716 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 128

Conread position: 24-651
Cow position: chr11:9156287-9155660 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 125

Conread position: 24-651
Cow position: chr11:47759417-47758781 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 58

Conread position: 24-651
Cow position: chr11:67154549-67155174 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 132

Conread position: 25-376
Cow position: chr11:4269540-4269182 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 25-400
Cow position: chr11:49558814-49558443 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 90, 23

Conread position: 25-541
Cow position: chr11:9224684-9224208 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 341
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 33, 27

Conread position: 25-612
Cow position: chr11:31927026-31927614 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 82

Conread position: 25-647
Cow position: chr11:24394175-24394807 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 57

Conread position: 25-651
Cow position: chr11:20506090-20506752 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 304

Conread position: 25-651
Cow position: chr11:38834573-38833950 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 97

Conread position: 25-651
Cow position: chr11:44582473-44581845 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 29

Conread position: 25-651
Cow position: chr11:53431188-53430535 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 136

Conread position: 25-651
Cow position: chr11:58135258-58135886 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 128

Conread position: 26-620
Cow position: chr11:9204970-9204397 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 393
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 11, 27

Conread position: 26-651
Cow position: chr11:67451357-67451990 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 35

Conread position: 27-295
Cow position: chr11:74424459-74424729 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 124

Conread position: 27-585
Cow position: chr11:32685760-32686299 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 53

Conread position: 28-560
Cow position: chr11:26074103-26073563 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 105

Conread position: 28-649
Cow position: chr11:26070184-26069550 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 79

Conread position: 28-651
Cow position: chr11:10883171-10883785 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 70

Conread position: 32-387
Cow position: chr11:81851844-81851512 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 241
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 262, 27

Conread position: 33-645
Cow position: chr11:19101617-19100998 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 133

Conread position: 42-651
Cow position: chr11:26784138-26784747 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 105

Conread position: 53-651
Cow position: chr11:27657335-27657935 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 66

Conread position: 80-272
Cow position: chr11:31754447-31754642 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 7, 68

Conread position: 88-461
Cow position: chr11:25865911-25865537 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 150

Conread position: 93-404
Cow position: chr11:54484348-54484034 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 23, 171

Conread position: 100-651
Cow position: chr11:7117358-7117908 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 49

Conread position: 117-552
Cow position: chr11:50949378-50948928 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 11

Conread position: 141-648
Cow position: chr11:2833308-2833785 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 183

Conread position: 148-651
Cow position: chr11:10056496-10056997 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 9

Conread position: 152-400
Cow position: chr11:28053650-28053400 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 17

Conread position: 181-651
Cow position: chr11:47738519-47738050 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 61

Conread position: 209-651
Cow position: chr11:50836620-50836170 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 199

Conread position: 210-525
Cow position: chr11:31754996-31754690 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 7, 72

Conread position: 214-651
Cow position: chr11:17119291-17118851 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 398

Conread position: 292-473
Cow position: chr11:9215376-9215189 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 58, 9

Conread position: 299-651
Cow position: chr11:4055187-4054839 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 26

Conread position: 305-651
Cow position: chr11:15986396-15986740 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 166

Conread position: 310-651
Cow position: chr11:86876733-86876386 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 5

Conread position: 312-558
Cow position: chr11:41234166-41234419 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 370-651
Cow position: chr11:10957032-10957313 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 416-651
Cow position: chr11:11578477-11578244 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 91, 0

Conread position: 422-650
Cow position: chr11:44041976-44042204 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 441-651
Cow position: chr11:47728404-47728194 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 67, 61

Conread position: 456-651
Cow position: chr11:42371115-42371310 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 149
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.