Cow genome map
| Conread name: | Lym2-sn47_E05.f |
| Conread position: | 10-651 |
| Cow position: | chr12:28005036-28005656 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 162 |
| Conread position: | 11-649 |
| Cow position: | chr12:1776833-1776185 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 289 |
| Conread position: | 11-651 |
| Cow position: | chr12:42858402-42857750 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 564 |
| Conread position: | 16-153 |
| Cow position: | chr12:43030241-43030102 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 101, 10 |
| Conread position: | 16-182 |
| Cow position: | chr12:35313258-35313089 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 16-259 |
| Cow position: | chr12:22570684-22570443 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-278 |
| Cow position: | chr12:21387103-21386838 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-347 |
| Cow position: | chr12:31202349-31202014 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-466 |
| Cow position: | chr12:20843757-20844191 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 141 |
| Conread position: | 16-585 |
| Cow position: | chr12:20996942-20996368 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 143 |
| Conread position: | 16-585 |
| Cow position: | chr12:48471738-48471168 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 14 |
| Conread position: | 16-631 |
| Cow position: | chr12:23141053-23140406 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 176 |
| Conread position: | 16-651 |
| Cow position: | chr12:3362079-3362717 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 354 |
| Conread position: | 16-651 |
| Cow position: | chr12:35345689-35346310 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 124 |
| Conread position: | 16-651 |
| Cow position: | chr12:42607126-42606466 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 347 |
| Conread position: | 17-606 |
| Cow position: | chr12:37560149-37560753 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 246 |
| Conread position: | 18-651 |
| Cow position: | chr12:6405500-6404854 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 272 |
| Conread position: | 21-651 |
| Cow position: | chr12:32654692-32655335 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 354 |
| Conread position: | 24-227 |
| Cow position: | chr12:21253465-21253259 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 24-539 |
| Cow position: | chr12:21942887-21943415 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 138 |
| Conread position: | 24-571 |
| Cow position: | chr12:1888412-1887854 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 150 |
| Conread position: | 25-400 |
| Cow position: | chr12:25099924-25099540 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 133 |
| Conread position: | 25-474 |
| Cow position: | chr12:21199131-21199588 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 132 |
| Conread position: | 25-562 |
| Cow position: | chr12:18993510-18992965 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 126 |
| Conread position: | 25-613 |
| Cow position: | chr12:1403641-1404244 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 157 |
| Conread position: | 25-651 |
| Cow position: | chr12:11099371-11100019 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 209 |
| Conread position: | 25-651 |
| Cow position: | chr12:27931755-27931123 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 135 |
| Conread position: | 26-345 |
| Cow position: | chr12:349552-349875 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 93 |
| Conread position: | 26-386 |
| Cow position: | chr12:33119308-33119679 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 42-651 |
| Cow position: | chr12:14661184-14660565 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 72-651 |
| Cow position: | chr12:21429203-21429793 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 86-651 |
| Cow position: | chr12:21209872-21210449 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 471 |
| Conread position: | 95-634 |
| Cow position: | chr12:32677755-32677233 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 100-651 |
| Cow position: | chr12:22204491-22203928 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 475 |
| Conread position: | 112-493 |
| Cow position: | chr12:34174355-34174743 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 377 |
| Conread position: | 120-651 |
| Cow position: | chr12:25262262-25261735 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 130-651 |
| Cow position: | chr12:24994707-24994178 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 169-344 |
| Cow position: | chr12:20461778-20461948 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 128, 82 |
| Conread position: | 208-400 |
| Cow position: | chr12:11581106-11581300 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 44 |
| Conread position: | 249-649 |
| Cow position: | chr12:22568380-22567975 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 273-651 |
| Cow position: | chr12:34174742-34175128 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 280 |
| Conread position: | 419-651 |
| Cow position: | chr12:21428040-21427808 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 442-637 |
| Cow position: | chr12:21224876-21224685 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.