Cow genome map
| Conread name: | Lym2-sn47_E05.f |
| Conread position: | 15-651 |
| Cow position: | chr16:3088753-3088108 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 270 |
| Conread position: | 16-217 |
| Cow position: | chr16:42735937-42735745 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 16-321 |
| Cow position: | chr16:28169899-28169586 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 55 |
| Conread position: | 16-324 |
| Cow position: | chr16:21186069-21186381 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 16-326 |
| Cow position: | chr16:11284046-11284360 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-351 |
| Cow position: | chr16:27714357-27714034 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 128 |
| Conread position: | 16-353 |
| Cow position: | chr16:26105606-26105256 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 104 |
| Conread position: | 16-357 |
| Cow position: | chr16:25189102-25189441 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 237 |
| Conread position: | 16-400 |
| Cow position: | chr16:23251983-23251584 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 389 |
| Conread position: | 16-425 |
| Cow position: | chr16:4478516-4478097 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 144 |
| Conread position: | 16-434 |
| Cow position: | chr16:31591462-31591040 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 144 |
| Conread position: | 16-498 |
| Cow position: | chr16:49255774-49255290 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 40 |
| Conread position: | 16-609 |
| Cow position: | chr16:1860670-1861289 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 65 |
| Conread position: | 16-622 |
| Cow position: | chr16:28196791-28196174 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 16-626 |
| Cow position: | chr16:23671151-23671779 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 98 |
| Conread position: | 16-636 |
| Cow position: | chr16:5485185-5485804 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 123 |
| Conread position: | 16-648 |
| Cow position: | chr16:54324881-54324236 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 151 |
| Conread position: | 16-649 |
| Cow position: | chr16:51084606-51085250 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 160 |
| Conread position: | 16-651 |
| Cow position: | chr16:337620-338280 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 232 |
| Conread position: | 16-651 |
| Cow position: | chr16:3330392-3331025 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 135 |
| Conread position: | 16-651 |
| Cow position: | chr16:5662283-5662935 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 16-651 |
| Cow position: | chr16:7676004-7675362 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 126 |
| Conread position: | 16-651 |
| Cow position: | chr16:10375145-10374507 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 491 |
| Conread position: | 16-651 |
| Cow position: | chr16:15567710-15568353 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 129 |
| Conread position: | 16-651 |
| Cow position: | chr16:18497844-18497220 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 46 |
| Conread position: | 16-651 |
| Cow position: | chr16:23535436-23534804 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 210 |
| Conread position: | 16-651 |
| Cow position: | chr16:25342412-25343066 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 252 |
| Conread position: | 16-651 |
| Cow position: | chr16:27593961-27594603 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 110 |
| Conread position: | 16-651 |
| Cow position: | chr16:40295720-40295071 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 304 |
| Conread position: | 17-541 |
| Cow position: | chr16:25001844-25001308 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 106 |
| Conread position: | 17-651 |
| Cow position: | chr16:19779195-19778556 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 18-600 |
| Cow position: | chr16:48334114-48333549 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 239 |
| Conread position: | 19-651 |
| Cow position: | chr16:837774-838408 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 89 |
| Conread position: | 20-604 |
| Cow position: | chr16:16270676-16270088 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 172 |
| Conread position: | 23-538 |
| Cow position: | chr16:16520293-16519788 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 20 |
| Conread position: | 24-651 |
| Cow position: | chr16:20202456-20203071 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 83 |
| Conread position: | 25-523 |
| Cow position: | chr16:41166183-41165704 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 76 |
| Conread position: | 25-552 |
| Cow position: | chr16:2482676-2482139 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 256 |
| Conread position: | 25-645 |
| Cow position: | chr16:10438715-10439348 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 252 |
| Conread position: | 25-651 |
| Cow position: | chr16:1432654-1433280 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 57 |
| Conread position: | 25-651 |
| Cow position: | chr16:2726766-2726119 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 247 |
| Conread position: | 25-651 |
| Cow position: | chr16:5890460-5891092 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 25-651 |
| Cow position: | chr16:8815641-8815012 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 137 |
| Conread position: | 25-651 |
| Cow position: | chr16:23983759-23984398 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 161 |
| Conread position: | 25-651 |
| Cow position: | chr16:25086080-25086707 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 126 |
| Conread position: | 25-651 |
| Cow position: | chr16:26664216-26664822 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 25-651 |
| Cow position: | chr16:34530766-34531383 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 129 |
| Conread position: | 26-221 |
| Cow position: | chr16:25171811-25172004 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 118, 93 |
| Conread position: | 26-460 |
| Cow position: | chr16:406576-406132 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 136 |
| Conread position: | 26-651 |
| Cow position: | chr16:1566991-1566368 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 194 |
| Conread position: | 26-651 |
| Cow position: | chr16:25457013-25456385 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 27-358 |
| Cow position: | chr16:23808793-23809118 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 88 |
| Conread position: | 27-626 |
| Cow position: | chr16:55049406-55048839 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 27-648 |
| Cow position: | chr16:12537483-12536859 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 21 |
| Conread position: | 31-651 |
| Cow position: | chr16:2238282-2237675 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 66 |
| Conread position: | 37-651 |
| Cow position: | chr16:28470599-28469966 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 41-651 |
| Cow position: | chr16:25258304-25258898 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 45-651 |
| Cow position: | chr16:33011-33627 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 199 |
| Conread position: | 54-651 |
| Cow position: | chr16:26978620-26979199 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 94 |
| Conread position: | 57-552 |
| Cow position: | chr16:40557452-40556948 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 176 |
| Conread position: | 58-392 |
| Cow position: | chr16:19080462-19080803 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 84-651 |
| Cow position: | chr16:32937050-32937605 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 22 |
| Conread position: | 100-598 |
| Cow position: | chr16:41685707-41685215 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 26 |
| Conread position: | 106-651 |
| Cow position: | chr16:10967530-10967006 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 81 |
| Conread position: | 115-651 |
| Cow position: | chr16:16228876-16229402 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 107 |
| Conread position: | 120-651 |
| Cow position: | chr16:1960051-1959530 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 28 |
| Conread position: | 127-651 |
| Cow position: | chr16:41754045-41753517 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 77 |
| Conread position: | 128-651 |
| Cow position: | chr16:41571960-41572495 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 240 |
| Conread position: | 141-651 |
| Cow position: | chr16:2410356-2409838 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 93 |
| Conread position: | 153-649 |
| Cow position: | chr16:5527795-5527293 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 98 |
| Conread position: | 170-651 |
| Cow position: | chr16:28158165-28158677 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 138 |
| Conread position: | 175-651 |
| Cow position: | chr16:37480244-37479760 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 215 |
| Conread position: | 180-568 |
| Cow position: | chr16:18677965-18678351 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 160 |
| Conread position: | 192-651 |
| Cow position: | chr16:48680099-48679652 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 229-651 |
| Cow position: | chr16:49233814-49233397 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 133 |
| Conread position: | 258-606 |
| Cow position: | chr16:18667083-18667433 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 101 |
| Conread position: | 264-651 |
| Cow position: | chr16:16240581-16240198 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 323-651 |
| Cow position: | chr16:28169560-28169226 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 332-651 |
| Cow position: | chr16:5119249-5118923 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 393-651 |
| Cow position: | chr16:20193334-20193076 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 432-651 |
| Cow position: | chr16:31588302-31588078 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.